Name | Number of supported studies | Average coverage | |
---|---|---|---|
astrocyte | 13 studies | 35% ± 21% | |
plasmacytoid dendritic cell | 11 studies | 28% ± 12% | |
endothelial cell | 8 studies | 32% ± 16% | |
ciliated cell | 7 studies | 26% ± 10% | |
oligodendrocyte | 6 studies | 33% ± 14% | |
retinal ganglion cell | 5 studies | 37% ± 19% | |
fibroblast | 5 studies | 23% ± 6% | |
epithelial cell | 5 studies | 23% ± 10% | |
basal cell | 4 studies | 27% ± 4% | |
cardiac muscle cell | 4 studies | 18% ± 3% | |
oligodendrocyte precursor cell | 4 studies | 29% ± 9% | |
smooth muscle cell | 3 studies | 22% ± 3% | |
abnormal cell | 3 studies | 29% ± 11% | |
extravillous trophoblast | 3 studies | 39% ± 14% | |
capillary endothelial cell | 3 studies | 39% ± 21% | |
endothelial cell of vascular tree | 3 studies | 19% ± 3% | |
melanocyte | 3 studies | 44% ± 27% | |
glutamatergic neuron | 3 studies | 40% ± 13% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 3 studies | 42% ± 7% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
bladder | 100% | 6030.90 | 21 / 21 | 80% | 32.74 | 404 / 504 |
brain | 88% | 1797.33 | 2332 / 2642 | 90% | 20.54 | 633 / 705 |
intestine | 96% | 2031.16 | 931 / 966 | 75% | 22.88 | 397 / 527 |
stomach | 96% | 2103.64 | 344 / 359 | 62% | 12.20 | 177 / 286 |
esophagus | 94% | 2189.43 | 1365 / 1445 | 53% | 12.34 | 97 / 183 |
kidney | 61% | 790.69 | 54 / 89 | 84% | 166.61 | 754 / 901 |
uterus | 53% | 558.91 | 90 / 170 | 80% | 41.32 | 369 / 459 |
breast | 61% | 952.45 | 282 / 459 | 70% | 22.95 | 787 / 1118 |
lung | 54% | 776.06 | 310 / 578 | 76% | 36.96 | 875 / 1155 |
ureter | 0% | 0 | 0 / 0 | 100% | 15.01 | 1 / 1 |
heart | 97% | 7776.17 | 837 / 861 | 0% | 0 | 0 / 0 |
skin | 72% | 8616.07 | 1305 / 1809 | 22% | 3.43 | 104 / 472 |
tonsil | 0% | 0 | 0 / 0 | 84% | 33.79 | 38 / 45 |
pancreas | 7% | 61.86 | 22 / 328 | 75% | 36.35 | 133 / 178 |
blood vessel | 77% | 2402.81 | 1027 / 1335 | 0% | 0 | 0 / 0 |
muscle | 76% | 1165.44 | 607 / 803 | 0% | 0 | 0 / 0 |
prostate | 64% | 969.11 | 156 / 245 | 10% | 1.25 | 50 / 502 |
ovary | 7% | 105.42 | 13 / 180 | 56% | 13.71 | 242 / 430 |
adipose | 56% | 1197.58 | 673 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 41% | 6.36 | 33 / 80 |
liver | 10% | 155.59 | 23 / 226 | 14% | 3.90 | 55 / 406 |
thymus | 11% | 98.96 | 75 / 653 | 9% | 1.26 | 56 / 605 |
spleen | 18% | 168.83 | 43 / 241 | 0% | 0 | 0 / 0 |
adrenal gland | 0% | 0 | 0 / 258 | 16% | 7.16 | 36 / 230 |
lymph node | 0% | 0 | 0 / 0 | 14% | 1.23 | 4 / 29 |
peripheral blood | 12% | 339.50 | 114 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0006919 | Biological process | activation of cysteine-type endopeptidase activity involved in apoptotic process |
GO_0018401 | Biological process | peptidyl-proline hydroxylation to 4-hydroxy-L-proline |
GO_0018126 | Biological process | protein hydroxylation |
GO_0006974 | Biological process | DNA damage response |
GO_0043523 | Biological process | regulation of neuron apoptotic process |
GO_0001666 | Biological process | response to hypoxia |
GO_0006915 | Biological process | apoptotic process |
GO_0042127 | Biological process | regulation of cell population proliferation |
GO_0071456 | Biological process | cellular response to hypoxia |
GO_0005634 | Cellular component | nucleus |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005829 | Cellular component | cytosol |
GO_0005737 | Cellular component | cytoplasm |
GO_0031418 | Molecular function | L-ascorbic acid binding |
GO_0160082 | Molecular function | hypoxia-inducible factor-proline dioxygenase activity |
GO_0016706 | Molecular function | 2-oxoglutarate-dependent dioxygenase activity |
GO_0008198 | Molecular function | ferrous iron binding |
GO_0005515 | Molecular function | protein binding |
GO_0031545 | Molecular function | peptidyl-proline 4-dioxygenase activity |
Gene name | EGLN3 |
Protein name | Egl-9 family hypoxia inducible factor 3 Prolyl hydroxylase EGLN3 (EC 1.14.11.-) (Egl nine homolog 3) (EC 1.14.11.29) (HPH-1) (Hypoxia-inducible factor prolyl hydroxylase 3) (HIF-PH3) (HIF-prolyl hydroxylase 3) (HPH-3) (Prolyl hydroxylase domain-containing protein 3) (PHD3) hypoxia-inducible factor-proline dioxygenase (EC 1.14.11.29) |
Synonyms | |
Description | FUNCTION: Prolyl hydroxylase that mediates hydroxylation of proline residues in target proteins, such as PKM, TELO2, ATF4 and HIF1A . Target proteins are preferentially recognized via a LXXLAP motif. Cellular oxygen sensor that catalyzes, under normoxic conditions, the post-translational formation of 4-hydroxyproline in hypoxia-inducible factor (HIF) alpha proteins . Hydroxylates a specific proline found in each of the oxygen-dependent degradation (ODD) domains (N-terminal, NODD, and C-terminal, CODD) of HIF1A . Also hydroxylates HIF2A . Has a preference for the CODD site for both HIF1A and HIF2A . Hydroxylation on the NODD site by EGLN3 appears to require prior hydroxylation on the CODD site . Hydroxylated HIFs are then targeted for proteasomal degradation via the von Hippel-Lindau ubiquitination complex . Under hypoxic conditions, the hydroxylation reaction is attenuated allowing HIFs to escape degradation resulting in their translocation to the nucleus, heterodimerization with HIF1B, and increased expression of hypoxy-inducible genes . ELGN3 is the most important isozyme in limiting physiological activation of HIFs (particularly HIF2A) in hypoxia. Also hydroxylates PKM in hypoxia, limiting glycolysis . Under normoxia, hydroxylates and regulates the stability of ADRB2 . Regulator of cardiomyocyte and neuronal apoptosis. In cardiomyocytes, inhibits the anti-apoptotic effect of BCL2 by disrupting the BAX-BCL2 complex . In neurons, has a NGF-induced proapoptotic effect, probably through regulating CASP3 activity . Also essential for hypoxic regulation of neutrophilic inflammation . Plays a crucial role in DNA damage response (DDR) by hydroxylating TELO2, promoting its interaction with ATR which is required for activation of the ATR/CHK1/p53 pathway . Also mediates hydroxylation of ATF4, leading to decreased protein stability of ATF4 (Probable). . |
Accessions | Q3T1B0 A6XP73 ENST00000250457.9 F8W1G2 G3V3M1 F8VR39 ENST00000553215.5 ENST00000487915.6 Q9H6Z9 ENST00000547327.2 |