Name | Number of supported studies | Average coverage | |
---|---|---|---|
fibroblast | 26 studies | 30% ± 15% | |
astrocyte | 17 studies | 40% ± 20% | |
ciliated cell | 13 studies | 30% ± 9% | |
endothelial cell | 13 studies | 27% ± 12% | |
smooth muscle cell | 11 studies | 22% ± 6% | |
adipocyte | 9 studies | 64% ± 14% | |
basal cell | 8 studies | 34% ± 16% | |
epithelial cell of proximal tubule | 8 studies | 27% ± 5% | |
epithelial cell | 8 studies | 43% ± 18% | |
type I pneumocyte | 8 studies | 26% ± 5% | |
goblet cell | 7 studies | 29% ± 16% | |
retinal rod cell | 7 studies | 35% ± 11% | |
club cell | 7 studies | 24% ± 8% | |
retinal cone cell | 7 studies | 59% ± 13% | |
type II pneumocyte | 7 studies | 27% ± 7% | |
hepatocyte | 6 studies | 78% ± 16% | |
kidney loop of Henle epithelial cell | 6 studies | 22% ± 5% | |
enterocyte | 5 studies | 19% ± 1% | |
cardiac muscle cell | 5 studies | 48% ± 7% | |
abnormal cell | 4 studies | 26% ± 15% | |
retinal pigment epithelial cell | 4 studies | 52% ± 22% | |
mucus secreting cell | 4 studies | 31% ± 12% | |
mesothelial cell | 4 studies | 33% ± 17% | |
Mueller cell | 4 studies | 25% ± 8% | |
luminal hormone-sensing cell of mammary gland | 4 studies | 27% ± 5% | |
GABAergic neuron | 4 studies | 36% ± 17% | |
oligodendrocyte precursor cell | 4 studies | 43% ± 11% | |
CD4-positive, alpha-beta T cell | 3 studies | 19% ± 1% | |
podocyte | 3 studies | 22% ± 5% | |
retinal ganglion cell | 3 studies | 21% ± 5% | |
myofibroblast cell | 3 studies | 35% ± 10% | |
macrophage | 3 studies | 24% ± 5% | |
muscle cell | 3 studies | 40% ± 23% | |
glutamatergic neuron | 3 studies | 45% ± 16% | |
microglial cell | 3 studies | 22% ± 5% | |
dendritic cell | 3 studies | 23% ± 1% | |
connective tissue cell | 3 studies | 19% ± 3% | |
ependymal cell | 3 studies | 48% ± 17% | |
enteroendocrine cell | 3 studies | 24% ± 5% | |
adventitial cell | 3 studies | 29% ± 3% | |
transit amplifying cell | 3 studies | 35% ± 27% | |
mast cell | 3 studies | 25% ± 12% | |
kidney distal convoluted tubule epithelial cell | 3 studies | 28% ± 10% | |
renal alpha-intercalated cell | 3 studies | 27% ± 3% | |
renal principal cell | 3 studies | 29% ± 11% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
prostate | 100% | 11065.49 | 245 / 245 | 100% | 34.42 | 502 / 502 |
thymus | 100% | 12111.73 | 653 / 653 | 100% | 31.97 | 604 / 605 |
liver | 100% | 28610.00 | 226 / 226 | 100% | 39.10 | 405 / 406 |
pancreas | 100% | 4932.70 | 328 / 328 | 99% | 17.34 | 176 / 178 |
kidney | 100% | 8031.70 | 89 / 89 | 99% | 22.67 | 888 / 901 |
breast | 100% | 7362.98 | 459 / 459 | 98% | 18.06 | 1093 / 1118 |
ovary | 100% | 14378.24 | 180 / 180 | 96% | 13.38 | 413 / 430 |
bladder | 100% | 6373.38 | 21 / 21 | 96% | 15.23 | 483 / 504 |
uterus | 100% | 7512.05 | 170 / 170 | 94% | 15.09 | 433 / 459 |
intestine | 100% | 5909.63 | 966 / 966 | 93% | 10.49 | 489 / 527 |
adrenal gland | 100% | 7167.40 | 258 / 258 | 92% | 10.05 | 212 / 230 |
lung | 99% | 3882.45 | 572 / 578 | 93% | 14.13 | 1072 / 1155 |
esophagus | 100% | 6291.69 | 1445 / 1445 | 91% | 10.46 | 166 / 183 |
stomach | 100% | 5606.84 | 359 / 359 | 87% | 9.46 | 250 / 286 |
brain | 89% | 2699.90 | 2346 / 2642 | 43% | 5.00 | 301 / 705 |
skin | 81% | 3098.53 | 1460 / 1809 | 44% | 4.32 | 210 / 472 |
ureter | 0% | 0 | 0 / 0 | 100% | 37.69 | 1 / 1 |
adipose | 100% | 5794.60 | 1202 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 4410.35 | 1330 / 1335 | 0% | 0 | 0 / 0 |
spleen | 100% | 3423.98 | 240 / 241 | 0% | 0 | 0 / 0 |
heart | 98% | 4458.39 | 844 / 861 | 0% | 0 | 0 / 0 |
muscle | 97% | 2755.06 | 781 / 803 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 84% | 12.20 | 38 / 45 |
eye | 0% | 0 | 0 / 0 | 76% | 7.53 | 61 / 80 |
lymph node | 0% | 0 | 0 / 0 | 69% | 5.09 | 20 / 29 |
peripheral blood | 29% | 464.50 | 265 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0006635 | Biological process | fatty acid beta-oxidation |
GO_0005739 | Cellular component | mitochondrion |
GO_0016829 | Molecular function | lyase activity |
Gene name | ECHDC2 |
Protein name | ECHDC2 protein Enoyl-CoA hydratase domain containing 2 Enoyl-CoA hydratase domain-containing protein 2, mitochondrial |
Synonyms | |
Description | |
Accessions | F5H408 F5H0R2 F6RJU0 F5H2K9 ENST00000544365.5 ENST00000542552.1 ENST00000358358.9 [Q86YB7-2] Q86V13 ENST00000536120.5 Q86YB7 ENST00000467988.2 ENST00000476477.6 F5GWU3 ENST00000371522.9 [Q86YB7-1] ENST00000371520.5 F5H4W3 |