Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 30 studies | 27% ± 13% | |
ciliated cell | 19 studies | 55% ± 16% | |
fibroblast | 14 studies | 23% ± 11% | |
astrocyte | 12 studies | 38% ± 17% | |
capillary endothelial cell | 11 studies | 20% ± 4% | |
pericyte | 11 studies | 23% ± 8% | |
adipocyte | 9 studies | 31% ± 9% | |
GABAergic neuron | 8 studies | 46% ± 23% | |
glutamatergic neuron | 8 studies | 57% ± 22% | |
oligodendrocyte precursor cell | 8 studies | 37% ± 17% | |
epithelial cell | 8 studies | 32% ± 14% | |
amacrine cell | 7 studies | 33% ± 7% | |
retinal rod cell | 7 studies | 31% ± 10% | |
oligodendrocyte | 7 studies | 27% ± 8% | |
smooth muscle cell | 6 studies | 22% ± 4% | |
retinal cone cell | 6 studies | 39% ± 11% | |
retina horizontal cell | 5 studies | 27% ± 7% | |
cardiac muscle cell | 5 studies | 35% ± 11% | |
endothelial cell of lymphatic vessel | 5 studies | 25% ± 5% | |
type I pneumocyte | 5 studies | 24% ± 6% | |
deuterosomal cell | 4 studies | 27% ± 8% | |
neuron | 4 studies | 36% ± 7% | |
retinal ganglion cell | 4 studies | 44% ± 9% | |
vein endothelial cell | 4 studies | 27% ± 17% | |
myeloid cell | 4 studies | 17% ± 2% | |
type II pneumocyte | 4 studies | 20% ± 3% | |
connective tissue cell | 4 studies | 19% ± 2% | |
macrophage | 4 studies | 22% ± 7% | |
basal cell | 4 studies | 30% ± 8% | |
interneuron | 4 studies | 58% ± 23% | |
myofibroblast cell | 3 studies | 21% ± 7% | |
retinal bipolar neuron | 3 studies | 21% ± 2% | |
lymphocyte | 3 studies | 17% ± 1% | |
Mueller cell | 3 studies | 33% ± 12% | |
abnormal cell | 3 studies | 28% ± 6% | |
goblet cell | 3 studies | 25% ± 10% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 100% | 1719.20 | 2637 / 2642 | 100% | 17.15 | 703 / 705 |
intestine | 100% | 2413.99 | 966 / 966 | 99% | 10.08 | 524 / 527 |
breast | 100% | 2339.28 | 459 / 459 | 99% | 13.95 | 1109 / 1118 |
stomach | 100% | 1462.10 | 359 / 359 | 99% | 9.74 | 283 / 286 |
esophagus | 100% | 2128.97 | 1445 / 1445 | 99% | 10.49 | 181 / 183 |
thymus | 100% | 2742.07 | 653 / 653 | 99% | 12.46 | 596 / 605 |
lung | 100% | 2059.09 | 578 / 578 | 98% | 11.23 | 1135 / 1155 |
kidney | 100% | 1764.54 | 89 / 89 | 98% | 18.13 | 885 / 901 |
ovary | 100% | 2167.98 | 180 / 180 | 98% | 12.58 | 422 / 430 |
prostate | 100% | 1870.38 | 245 / 245 | 97% | 8.21 | 489 / 502 |
bladder | 100% | 2043.62 | 21 / 21 | 96% | 8.52 | 486 / 504 |
adrenal gland | 100% | 1520.91 | 257 / 258 | 96% | 9.17 | 221 / 230 |
skin | 100% | 1525.67 | 1808 / 1809 | 95% | 11.76 | 449 / 472 |
uterus | 100% | 2382.21 | 170 / 170 | 95% | 8.55 | 434 / 459 |
pancreas | 95% | 736.07 | 312 / 328 | 98% | 10.14 | 175 / 178 |
liver | 86% | 533.40 | 194 / 226 | 44% | 2.79 | 177 / 406 |
adipose | 100% | 2248.04 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 2116.86 | 1335 / 1335 | 0% | 0 | 0 / 0 |
muscle | 100% | 1869.53 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 1200.00 | 241 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 3.21 | 1 / 1 |
heart | 99% | 2153.20 | 852 / 861 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 89% | 6.88 | 40 / 45 |
eye | 0% | 0 | 0 / 0 | 86% | 7.24 | 69 / 80 |
lymph node | 0% | 0 | 0 / 0 | 72% | 3.82 | 21 / 29 |
peripheral blood | 26% | 317.36 | 240 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0060271 | Biological process | cilium assembly |
GO_0048704 | Biological process | embryonic skeletal system morphogenesis |
GO_0035721 | Biological process | intraciliary retrograde transport |
GO_0097542 | Cellular component | ciliary tip |
GO_0005813 | Cellular component | centrosome |
GO_0005615 | Cellular component | extracellular space |
GO_0005929 | Cellular component | cilium |
GO_0031021 | Cellular component | interphase microtubule organizing center |
GO_0000242 | Cellular component | pericentriolar material |
GO_0005868 | Cellular component | cytoplasmic dynein complex |
GO_0000922 | Cellular component | spindle pole |
GO_0005737 | Cellular component | cytoplasm |
GO_0097546 | Cellular component | ciliary base |
GO_0045503 | Molecular function | dynein light chain binding |
GO_0005515 | Molecular function | protein binding |
GO_0045504 | Molecular function | dynein heavy chain binding |
Gene name | DYNC2I1 |
Protein name | Cytoplasmic dynein 2 intermediate chain 1 (Dynein 2 intermediate chain 1) (WD repeat-containing protein 60) Dynein 2 intermediate chain 1 |
Synonyms | WDR60 |
Description | FUNCTION: Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 2 complex (dynein-2 complex), a motor protein complex that drives the movement of cargos along microtubules within cilia and flagella in concert with the intraflagellar transport (IFT) system . DYNC2I1 plays a major role in retrograde ciliary protein trafficking in cilia and flagella . Requires also to maintain a functional transition zone . . |
Accessions | H7C022 ENST00000397143.3 ENST00000407559.8 ENST00000454771.1 Q8WVS4 ENST00000444851.5 H7BYQ2 H7C1E8 |