Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 18 studies | 34% ± 17% | |
astrocyte | 16 studies | 42% ± 17% | |
glutamatergic neuron | 13 studies | 56% ± 25% | |
oligodendrocyte precursor cell | 13 studies | 42% ± 17% | |
oligodendrocyte | 12 studies | 31% ± 12% | |
GABAergic neuron | 11 studies | 56% ± 24% | |
adipocyte | 9 studies | 32% ± 11% | |
B cell | 8 studies | 31% ± 11% | |
neuron | 7 studies | 42% ± 17% | |
interneuron | 7 studies | 58% ± 25% | |
pericyte | 7 studies | 27% ± 14% | |
microglial cell | 6 studies | 29% ± 16% | |
retinal ganglion cell | 6 studies | 41% ± 17% | |
plasma cell | 6 studies | 47% ± 18% | |
retinal cone cell | 6 studies | 36% ± 15% | |
fibroblast | 6 studies | 33% ± 14% | |
macrophage | 5 studies | 28% ± 7% | |
amacrine cell | 5 studies | 41% ± 16% | |
cardiac muscle cell | 5 studies | 53% ± 14% | |
smooth muscle cell | 5 studies | 24% ± 5% | |
granule cell | 4 studies | 48% ± 7% | |
retinal bipolar neuron | 4 studies | 28% ± 13% | |
Mueller cell | 4 studies | 31% ± 8% | |
retina horizontal cell | 4 studies | 45% ± 10% | |
retinal rod cell | 4 studies | 41% ± 7% | |
endothelial cell of lymphatic vessel | 4 studies | 21% ± 4% | |
GABAergic interneuron | 3 studies | 57% ± 3% | |
epithelial cell | 3 studies | 32% ± 10% | |
progenitor cell | 3 studies | 30% ± 4% | |
GABAergic amacrine cell | 3 studies | 52% ± 9% | |
OFF-bipolar cell | 3 studies | 34% ± 10% | |
ON-bipolar cell | 3 studies | 36% ± 10% | |
glycinergic amacrine cell | 3 studies | 39% ± 1% | |
rod bipolar cell | 3 studies | 39% ± 17% | |
hepatocyte | 3 studies | 68% ± 20% | |
retinal pigment epithelial cell | 3 studies | 36% ± 14% | |
ependymal cell | 3 studies | 45% ± 14% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 100% | 2738.11 | 2639 / 2642 | 100% | 17.37 | 703 / 705 |
adrenal gland | 100% | 1843.85 | 258 / 258 | 97% | 11.95 | 222 / 230 |
kidney | 100% | 991.38 | 89 / 89 | 94% | 7.53 | 848 / 901 |
liver | 100% | 1352.59 | 226 / 226 | 93% | 6.06 | 376 / 406 |
pancreas | 99% | 893.82 | 326 / 328 | 86% | 4.34 | 153 / 178 |
stomach | 98% | 722.46 | 351 / 359 | 82% | 4.95 | 235 / 286 |
breast | 100% | 1018.49 | 459 / 459 | 78% | 4.41 | 876 / 1118 |
thymus | 99% | 751.89 | 647 / 653 | 78% | 3.56 | 471 / 605 |
lung | 97% | 663.21 | 562 / 578 | 77% | 4.13 | 886 / 1155 |
ovary | 100% | 4531.27 | 180 / 180 | 69% | 3.44 | 298 / 430 |
intestine | 100% | 1288.81 | 966 / 966 | 67% | 3.60 | 353 / 527 |
skin | 71% | 579.91 | 1291 / 1809 | 93% | 8.84 | 439 / 472 |
prostate | 94% | 645.59 | 231 / 245 | 59% | 2.24 | 296 / 502 |
uterus | 100% | 1493.06 | 170 / 170 | 49% | 2.96 | 223 / 459 |
bladder | 100% | 844.86 | 21 / 21 | 42% | 1.70 | 212 / 504 |
esophagus | 67% | 638.62 | 969 / 1445 | 72% | 5.18 | 131 / 183 |
muscle | 100% | 1726.96 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 1478.65 | 241 / 241 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 1313.53 | 1333 / 1335 | 0% | 0 | 0 / 0 |
adipose | 100% | 1139.97 | 1202 / 1204 | 0% | 0 | 0 / 0 |
heart | 96% | 1993.33 | 830 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 86% | 6.50 | 69 / 80 |
lymph node | 0% | 0 | 0 / 0 | 69% | 4.74 | 20 / 29 |
tonsil | 0% | 0 | 0 / 0 | 29% | 1.01 | 13 / 45 |
peripheral blood | 21% | 511.13 | 196 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_1905885 | Biological process | positive regulation of triglyceride transport |
GO_0005829 | Cellular component | cytosol |
GO_0016020 | Cellular component | membrane |
GO_0005085 | Molecular function | guanyl-nucleotide exchange factor activity |
GO_0031267 | Molecular function | small GTPase binding |
Gene name | DENND5B |
Protein name | DENN domain containing 5B DENN domain-containing protein 5B (Rab6IP1-like protein) |
Synonyms | hCG_1810950 MGC24039 |
Description | FUNCTION: Guanine nucleotide exchange factor (GEF) which may activate RAB39A and/or RAB39B. Promotes the exchange of GDP to GTP, converting inactive GDP-bound Rab proteins into their active GTP-bound form. . |
Accessions | Q6ZUT9 ENST00000389082.10 [Q6ZUT9-1] G3V1S3 H0YGE5 F5H4A0 ENST00000544698.1 ENST00000354285.8 [Q6ZUT9-4] ENST00000546299.1 ENST00000536562.5 |