Name | Number of supported studies | Average coverage | |
---|---|---|---|
basal cell | 12 studies | 42% ± 21% | |
ciliated cell | 12 studies | 37% ± 14% | |
club cell | 10 studies | 76% ± 24% | |
secretory cell | 10 studies | 67% ± 24% | |
type II pneumocyte | 9 studies | 68% ± 26% | |
epithelial cell | 8 studies | 58% ± 22% | |
respiratory goblet cell | 6 studies | 77% ± 14% | |
mucus secreting cell | 5 studies | 52% ± 25% | |
deuterosomal cell | 4 studies | 41% ± 9% | |
duct epithelial cell | 4 studies | 91% ± 5% | |
type I pneumocyte | 3 studies | 35% ± 10% | |
squamous epithelial cell | 3 studies | 59% ± 19% | |
serous secreting cell | 3 studies | 83% ± 11% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
lung | 7 studies | 40% ± 17% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
pancreas | 93% | 1382.37 | 305 / 328 | 69% | 182.31 | 122 / 178 |
lung | 82% | 4045.81 | 473 / 578 | 76% | 455.38 | 874 / 1155 |
stomach | 78% | 10729.15 | 279 / 359 | 28% | 121.28 | 81 / 286 |
ureter | 0% | 0 | 0 / 0 | 100% | 84.01 | 1 / 1 |
esophagus | 40% | 2593.93 | 572 / 1445 | 45% | 101.53 | 82 / 183 |
bladder | 38% | 381.10 | 8 / 21 | 46% | 202.06 | 233 / 504 |
uterus | 5% | 55.35 | 8 / 170 | 63% | 407.32 | 289 / 459 |
tonsil | 0% | 0 | 0 / 0 | 64% | 236.42 | 29 / 45 |
prostate | 50% | 653.31 | 122 / 245 | 10% | 9.50 | 50 / 502 |
ovary | 1% | 11.10 | 2 / 180 | 52% | 180.33 | 224 / 430 |
breast | 9% | 65.00 | 42 / 459 | 23% | 78.91 | 259 / 1118 |
thymus | 2% | 7.53 | 14 / 653 | 29% | 29.65 | 177 / 605 |
intestine | 0% | 22.75 | 2 / 966 | 14% | 66.12 | 72 / 527 |
liver | 0% | 0 | 0 / 226 | 3% | 3.68 | 12 / 406 |
skin | 0% | 4.07 | 7 / 1809 | 1% | 0.79 | 4 / 472 |
adrenal gland | 0% | 2.68 | 1 / 258 | 0% | 0 | 0 / 230 |
adipose | 0% | 5.89 | 4 / 1204 | 0% | 0 | 0 / 0 |
muscle | 0% | 1.57 | 2 / 803 | 0% | 0 | 0 / 0 |
kidney | 0% | 0 | 0 / 89 | 0% | 0.90 | 2 / 901 |
brain | 0% | 0 | 0 / 2642 | 0% | 0.18 | 1 / 705 |
peripheral blood | 0% | 15.12 | 1 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
blood vessel | 0% | 0 | 0 / 1335 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 80 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
heart | 0% | 0 | 0 / 861 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spleen | 0% | 0 | 0 / 241 | 0% | 0 | 0 / 0 |
GO_0090026 | Biological process | positive regulation of monocyte chemotaxis |
GO_0001525 | Biological process | angiogenesis |
GO_0010759 | Biological process | positive regulation of macrophage chemotaxis |
GO_0050728 | Biological process | negative regulation of inflammatory response |
GO_0030154 | Biological process | cell differentiation |
GO_0070374 | Biological process | positive regulation of ERK1 and ERK2 cascade |
GO_0010575 | Biological process | positive regulation of vascular endothelial growth factor production |
GO_0048246 | Biological process | macrophage chemotaxis |
GO_0005615 | Cellular component | extracellular space |
GO_0005515 | Molecular function | protein binding |
Gene name | CXCL17 |
Protein name | C-X-C motif chemokine 17 (6-Cys CXCL17) (Dendritic cell and monocyte chemokine-like protein) (DMC) (VEGF coregulated chemokine 1) [Cleaved into: 4-Cys CXCL17] C-X-C motif chemokine ligand 17 |
Synonyms | VCC1 UNQ473/PRO842 |
Description | FUNCTION: Chemokine that acts as a chemoattractant for monocytes, macrophages and dendritic cells . Plays a role in angiogenesis and possibly in the development of tumors . Acts as an anti-inflammatory in the stomach . May play a role in the innate defense against infections . Activates the C-X-C chemokine receptor GPR35 to induce a rapid and transient rise in the level of intracellular calcium ions . .; FUNCTION: [4-Cys CXCL17]: Seems to exhibit much higher chemoattractant potency on monocytes and macrophages than 6-Cys CXCL17. . |
Accessions | ENST00000601181.6 Q6UXB2 ENST00000341918.4 X6R584 |