Name | Number of supported studies | Average coverage | |
---|---|---|---|
mast cell | 27 studies | 39% ± 13% | |
endothelial cell | 11 studies | 25% ± 9% | |
macrophage | 7 studies | 24% ± 4% | |
microglial cell | 6 studies | 24% ± 7% | |
non-classical monocyte | 5 studies | 28% ± 11% | |
conventional dendritic cell | 5 studies | 27% ± 12% | |
epithelial cell | 5 studies | 30% ± 8% | |
fibroblast | 5 studies | 20% ± 3% | |
astrocyte | 5 studies | 27% ± 11% | |
oligodendrocyte | 5 studies | 27% ± 7% | |
natural killer cell | 4 studies | 18% ± 3% | |
hematopoietic precursor cell | 4 studies | 27% ± 7% | |
B cell | 4 studies | 21% ± 6% | |
myeloid cell | 4 studies | 23% ± 6% | |
dendritic cell | 4 studies | 34% ± 18% | |
GABAergic neuron | 4 studies | 42% ± 16% | |
glutamatergic neuron | 4 studies | 46% ± 18% | |
oligodendrocyte precursor cell | 4 studies | 25% ± 8% | |
monocyte | 4 studies | 16% ± 2% | |
neuron | 4 studies | 36% ± 12% | |
plasmacytoid dendritic cell | 4 studies | 22% ± 6% | |
naive B cell | 3 studies | 18% ± 2% | |
CD16-positive, CD56-dim natural killer cell, human | 3 studies | 17% ± 0% | |
classical monocyte | 3 studies | 24% ± 7% | |
ciliated cell | 3 studies | 22% ± 5% | |
lymphocyte | 3 studies | 20% ± 1% | |
granulocyte | 3 studies | 35% ± 18% | |
megakaryocyte-erythroid progenitor cell | 3 studies | 54% ± 24% | |
basal cell | 3 studies | 25% ± 3% | |
pericyte | 3 studies | 20% ± 1% | |
erythroblast | 3 studies | 33% ± 4% | |
interneuron | 3 studies | 38% ± 18% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 2384.00 | 1445 / 1445 | 100% | 32.65 | 183 / 183 |
liver | 100% | 1334.30 | 226 / 226 | 100% | 41.65 | 406 / 406 |
prostate | 100% | 2085.77 | 245 / 245 | 100% | 41.76 | 502 / 502 |
skin | 100% | 2257.78 | 1809 / 1809 | 100% | 59.78 | 472 / 472 |
stomach | 100% | 2094.28 | 359 / 359 | 100% | 47.13 | 286 / 286 |
thymus | 100% | 1615.37 | 653 / 653 | 100% | 39.05 | 605 / 605 |
uterus | 100% | 2410.15 | 170 / 170 | 100% | 58.98 | 459 / 459 |
lung | 100% | 2154.66 | 578 / 578 | 100% | 39.76 | 1154 / 1155 |
brain | 100% | 1338.52 | 2635 / 2642 | 100% | 44.53 | 705 / 705 |
kidney | 100% | 1501.82 | 89 / 89 | 100% | 35.67 | 898 / 901 |
breast | 100% | 2168.16 | 459 / 459 | 100% | 46.93 | 1113 / 1118 |
ovary | 100% | 1867.58 | 180 / 180 | 100% | 27.56 | 428 / 430 |
intestine | 100% | 2377.72 | 966 / 966 | 99% | 50.16 | 524 / 527 |
bladder | 100% | 2326.86 | 21 / 21 | 99% | 53.51 | 501 / 504 |
adrenal gland | 100% | 1425.23 | 258 / 258 | 98% | 30.88 | 226 / 230 |
pancreas | 96% | 834.30 | 315 / 328 | 99% | 43.06 | 177 / 178 |
adipose | 100% | 2219.31 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 2458.58 | 1335 / 1335 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 43.26 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 80.02 | 29 / 29 |
muscle | 100% | 1716.29 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 4182.16 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 45.80 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 25.38 | 1 / 1 |
peripheral blood | 99% | 2071.01 | 918 / 929 | 0% | 0 | 0 / 0 |
heart | 98% | 1783.52 | 845 / 861 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0000398 | Biological process | mRNA splicing, via spliceosome |
GO_0002250 | Biological process | adaptive immune response |
GO_0016445 | Biological process | somatic diversification of immunoglobulins |
GO_0043065 | Biological process | positive regulation of apoptotic process |
GO_0005813 | Cellular component | centrosome |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005829 | Cellular component | cytosol |
GO_0005681 | Cellular component | spliceosomal complex |
GO_0000974 | Cellular component | Prp19 complex |
GO_0016020 | Cellular component | membrane |
GO_0005634 | Cellular component | nucleus |
GO_0019899 | Molecular function | enzyme binding |
GO_0005515 | Molecular function | protein binding |
Gene name | CTNNBL1 |
Protein name | Beta-catenin-like protein 1 (Nuclear-associated protein) (NAP) (Testis development protein NYD-SP19) Catenin beta like 1 |
Synonyms | C20orf33 PP8304 |
Description | FUNCTION: Component of the PRP19-CDC5L complex that forms an integral part of the spliceosome and is required for activating pre-mRNA splicing. Participates in AID/AICDA-mediated somatic hypermutation (SHM) and class-switch recombination (CSR), 2 processes resulting in the production of high-affinity, mutated isotype-switched antibodies . . |
Accessions | Q8WYA6 ENST00000373469.1 [Q8WYA6-3] ENST00000621317.4 ENST00000447935.3 ENST00000628103.2 [Q8WYA6-4] A0A087WUB9 A2A2P1 ENST00000361383.11 [Q8WYA6-1] ENST00000373473.5 [Q8WYA6-2] |