Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 16 studies | 39% ± 20% | |
type I pneumocyte | 9 studies | 34% ± 14% | |
astrocyte | 9 studies | 36% ± 18% | |
endothelial cell of lymphatic vessel | 6 studies | 24% ± 7% | |
fibroblast | 6 studies | 18% ± 2% | |
type II pneumocyte | 6 studies | 29% ± 9% | |
kidney loop of Henle epithelial cell | 5 studies | 55% ± 25% | |
Mueller cell | 5 studies | 40% ± 16% | |
club cell | 5 studies | 21% ± 6% | |
podocyte | 4 studies | 36% ± 14% | |
kidney distal convoluted tubule epithelial cell | 4 studies | 48% ± 12% | |
endothelial cell of artery | 3 studies | 21% ± 2% | |
endocardial cell | 3 studies | 56% ± 11% | |
epithelial cell | 3 studies | 33% ± 12% | |
mesothelial cell | 3 studies | 32% ± 12% | |
hepatocyte | 3 studies | 59% ± 18% | |
renal alpha-intercalated cell | 3 studies | 54% ± 21% | |
renal principal cell | 3 studies | 22% ± 7% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
prostate | 100% | 9437.35 | 245 / 245 | 100% | 58.93 | 502 / 502 |
thymus | 100% | 7020.08 | 653 / 653 | 92% | 37.77 | 556 / 605 |
liver | 100% | 5213.31 | 226 / 226 | 92% | 29.40 | 373 / 406 |
kidney | 100% | 12292.25 | 89 / 89 | 85% | 37.16 | 767 / 901 |
brain | 91% | 2583.04 | 2407 / 2642 | 88% | 12.94 | 623 / 705 |
pancreas | 100% | 3502.22 | 328 / 328 | 76% | 9.20 | 136 / 178 |
breast | 79% | 2407.96 | 364 / 459 | 84% | 19.66 | 942 / 1118 |
lung | 99% | 4270.26 | 573 / 578 | 61% | 8.95 | 703 / 1155 |
adrenal gland | 100% | 3985.93 | 258 / 258 | 36% | 11.26 | 83 / 230 |
uterus | 100% | 5831.42 | 170 / 170 | 33% | 4.59 | 153 / 459 |
stomach | 100% | 4122.28 | 359 / 359 | 29% | 3.29 | 84 / 286 |
ovary | 99% | 2048.48 | 178 / 180 | 29% | 2.58 | 126 / 430 |
esophagus | 97% | 2910.70 | 1395 / 1445 | 31% | 3.69 | 57 / 183 |
bladder | 100% | 2992.43 | 21 / 21 | 18% | 2.11 | 89 / 504 |
blood vessel | 94% | 2449.66 | 1260 / 1335 | 0% | 0 | 0 / 0 |
heart | 94% | 3540.64 | 812 / 861 | 0% | 0 | 0 / 0 |
skin | 72% | 2575.94 | 1296 / 1809 | 17% | 2.64 | 79 / 472 |
intestine | 63% | 872.81 | 608 / 966 | 21% | 2.21 | 111 / 527 |
adipose | 70% | 1286.95 | 842 / 1204 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 33% | 4.32 | 15 / 45 |
eye | 0% | 0 | 0 / 0 | 18% | 1.87 | 14 / 80 |
lymph node | 0% | 0 | 0 / 0 | 3% | 0.22 | 1 / 29 |
muscle | 1% | 12.19 | 9 / 803 | 0% | 0 | 0 / 0 |
spleen | 1% | 8.27 | 2 / 241 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 0.68 | 1 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0150105 | Biological process | protein localization to cell-cell junction |
GO_0051058 | Biological process | negative regulation of small GTPase mediated signal transduction |
GO_0007015 | Biological process | actin filament organization |
GO_0051497 | Biological process | negative regulation of stress fiber assembly |
GO_0032991 | Cellular component | protein-containing complex |
GO_0016459 | Cellular component | myosin complex |
GO_0005923 | Cellular component | bicellular tight junction |
GO_0005515 | Molecular function | protein binding |
Gene name | CGNL1 |
Protein name | Cingulin-like protein 1 (Junction-associated coiled-coil protein) (Paracingulin) CGNL1 protein |
Synonyms | KIAA1749 JACOP |
Description | FUNCTION: May be involved in anchoring the apical junctional complex, especially tight junctions, to actin-based cytoskeletons. . |
Accessions | ENST00000281282.6 [Q0VF96-1] Q6P5Q2 Q0VF96 |