Name | Number of supported studies | Average coverage | |
---|---|---|---|
B cell | 10 studies | 20% ± 5% | |
dendritic cell | 10 studies | 26% ± 9% | |
astrocyte | 10 studies | 32% ± 14% | |
type I pneumocyte | 9 studies | 36% ± 11% | |
endothelial cell | 9 studies | 25% ± 10% | |
glutamatergic neuron | 9 studies | 43% ± 24% | |
epithelial cell | 8 studies | 38% ± 18% | |
basal cell | 8 studies | 31% ± 15% | |
GABAergic neuron | 8 studies | 34% ± 21% | |
conventional dendritic cell | 7 studies | 23% ± 7% | |
smooth muscle cell | 7 studies | 18% ± 2% | |
interneuron | 6 studies | 35% ± 21% | |
oligodendrocyte precursor cell | 6 studies | 29% ± 12% | |
ciliated cell | 6 studies | 29% ± 15% | |
club cell | 6 studies | 27% ± 7% | |
type II pneumocyte | 6 studies | 19% ± 5% | |
respiratory goblet cell | 5 studies | 22% ± 4% | |
neuron | 5 studies | 23% ± 9% | |
microglial cell | 5 studies | 22% ± 4% | |
retinal ganglion cell | 5 studies | 31% ± 15% | |
macrophage | 5 studies | 20% ± 3% | |
secretory cell | 4 studies | 26% ± 6% | |
naive B cell | 4 studies | 20% ± 5% | |
goblet cell | 4 studies | 32% ± 25% | |
oligodendrocyte | 4 studies | 24% ± 8% | |
GABAergic interneuron | 3 studies | 20% ± 4% | |
granule cell | 3 studies | 29% ± 11% | |
myeloid cell | 3 studies | 19% ± 3% | |
brush cell | 3 studies | 28% ± 6% | |
lymphocyte | 3 studies | 23% ± 3% | |
glycinergic amacrine cell | 3 studies | 19% ± 2% | |
retinal cone cell | 3 studies | 23% ± 5% | |
retinal rod cell | 3 studies | 26% ± 3% | |
fibroblast | 3 studies | 19% ± 1% | |
pancreatic ductal cell | 3 studies | 44% ± 21% | |
alveolar macrophage | 3 studies | 20% ± 5% | |
endothelial cell of lymphatic vessel | 3 studies | 20% ± 3% | |
transit amplifying cell | 3 studies | 37% ± 23% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
breast | 100% | 4042.52 | 459 / 459 | 100% | 76.16 | 1118 / 1118 |
esophagus | 100% | 5951.49 | 1445 / 1445 | 100% | 66.51 | 183 / 183 |
ovary | 100% | 3010.30 | 180 / 180 | 100% | 95.77 | 430 / 430 |
pancreas | 100% | 2996.25 | 328 / 328 | 100% | 48.79 | 178 / 178 |
prostate | 100% | 4517.34 | 245 / 245 | 100% | 60.89 | 501 / 502 |
stomach | 100% | 2989.38 | 359 / 359 | 100% | 50.58 | 285 / 286 |
uterus | 100% | 6364.73 | 170 / 170 | 100% | 54.92 | 457 / 459 |
lung | 99% | 4038.57 | 575 / 578 | 100% | 48.77 | 1153 / 1155 |
intestine | 100% | 5586.19 | 966 / 966 | 99% | 43.49 | 523 / 527 |
thymus | 100% | 3974.87 | 653 / 653 | 99% | 37.28 | 600 / 605 |
bladder | 100% | 4831.48 | 21 / 21 | 99% | 37.92 | 498 / 504 |
brain | 99% | 3892.44 | 2605 / 2642 | 100% | 29.63 | 703 / 705 |
kidney | 100% | 2978.89 | 89 / 89 | 97% | 31.04 | 872 / 901 |
adrenal gland | 100% | 3237.78 | 258 / 258 | 93% | 23.39 | 215 / 230 |
skin | 100% | 6461.15 | 1809 / 1809 | 89% | 19.86 | 418 / 472 |
liver | 91% | 1197.65 | 206 / 226 | 66% | 13.78 | 266 / 406 |
adipose | 100% | 3254.59 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 6814.04 | 1335 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 36.98 | 29 / 29 |
spleen | 100% | 2842.83 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 41.79 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 14.47 | 1 / 1 |
muscle | 99% | 2959.79 | 797 / 803 | 0% | 0 | 0 / 0 |
heart | 85% | 1594.96 | 728 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 79% | 13.97 | 63 / 80 |
peripheral blood | 47% | 1336.33 | 436 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0007010 | Biological process | cytoskeleton organization |
GO_0008150 | Biological process | biological_process |
GO_0005856 | Cellular component | cytoskeleton |
GO_0005829 | Cellular component | cytosol |
GO_0005200 | Molecular function | structural constituent of cytoskeleton |
GO_0042802 | Molecular function | identical protein binding |
GO_0005515 | Molecular function | protein binding |
GO_0017124 | Molecular function | SH3 domain binding |
Gene name | CCDC6 |
Protein name | Coiled-coil domain-containing protein 6 (Papillary thyroid carcinoma-encoded protein) (Protein H4) CCDC6 protein |
Synonyms | TST1 D10S170 |
Description | |
Accessions | ENST00000263102.7 Q05CP8 Q16204 |