Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 100% | 1326.07 | 2635 / 2642 | 100% | 14.71 | 705 / 705 |
esophagus | 100% | 1556.18 | 1444 / 1445 | 99% | 30.10 | 182 / 183 |
kidney | 100% | 1601.08 | 89 / 89 | 99% | 18.85 | 894 / 901 |
lung | 100% | 1736.77 | 576 / 578 | 99% | 22.19 | 1148 / 1155 |
stomach | 100% | 1554.74 | 359 / 359 | 98% | 26.90 | 280 / 286 |
intestine | 100% | 1334.05 | 966 / 966 | 98% | 22.88 | 514 / 527 |
thymus | 100% | 1640.24 | 652 / 653 | 97% | 11.57 | 589 / 605 |
ovary | 100% | 854.83 | 180 / 180 | 96% | 11.90 | 414 / 430 |
uterus | 99% | 884.59 | 169 / 170 | 97% | 14.91 | 444 / 459 |
bladder | 100% | 1108.48 | 21 / 21 | 95% | 15.15 | 479 / 504 |
pancreas | 94% | 608.90 | 309 / 328 | 99% | 23.11 | 176 / 178 |
skin | 100% | 1981.11 | 1804 / 1809 | 93% | 18.85 | 439 / 472 |
adrenal gland | 100% | 984.63 | 258 / 258 | 92% | 9.23 | 211 / 230 |
breast | 100% | 1442.10 | 458 / 459 | 88% | 11.79 | 980 / 1118 |
liver | 100% | 1125.13 | 226 / 226 | 84% | 8.55 | 340 / 406 |
prostate | 99% | 710.29 | 243 / 245 | 63% | 4.05 | 315 / 502 |
lymph node | 0% | 0 | 0 / 0 | 100% | 13.85 | 29 / 29 |
spleen | 100% | 2133.91 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 11.85 | 45 / 45 |
adipose | 100% | 1872.66 | 1203 / 1204 | 0% | 0 | 0 / 0 |
muscle | 100% | 1002.59 | 800 / 803 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 1194.69 | 1330 / 1335 | 0% | 0 | 0 / 0 |
heart | 97% | 1098.61 | 832 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 95% | 1469.82 | 880 / 929 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 44% | 2.95 | 35 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0016267 | Biological process | O-glycan processing, core 1 |
GO_0001525 | Biological process | angiogenesis |
GO_0001822 | Biological process | kidney development |
GO_0060576 | Biological process | intestinal epithelial cell development |
GO_0006493 | Biological process | protein O-linked glycosylation |
GO_0000139 | Cellular component | Golgi membrane |
GO_0016020 | Cellular component | membrane |
GO_0005515 | Molecular function | protein binding |
GO_0046872 | Molecular function | metal ion binding |
GO_0000166 | Molecular function | nucleotide binding |
GO_0016263 | Molecular function | glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity |
Gene name | C1GALT1 |
Protein name | Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 (EC 2.4.1.122) (Core 1 O-glycan T-synthase) (Core 1 UDP-galactose:N-acetylgalactosamine-alpha-R beta 1,3-galactosyltransferase 1) (Core 1 beta1,3-galactosyltransferase 1) Core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 (EC 2.4.1.122) (B3Gal-T8) (Core 1 O-glycan T-synthase) (Core 1 UDP-galactose:N-acetylgalactosamine-alpha-R beta 1,3-galactosyltransferase 1) (Beta-1,3-galactosyltransferase) (Core 1 beta1,3-galactosyltransferase 1) (C1GalT1) (Core 1 beta3-Gal-T1) |
Synonyms | hCG_19533 |
Description | FUNCTION: Glycosyltransferase that generates the core 1 O-glycan Gal-beta1-3GalNAc-alpha1-Ser/Thr (T antigen), which is a precursor for many extended O-glycans in glycoproteins . Plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development (By similarity). . |
Accessions | C9K0C8 ENST00000436587.7 [Q9NS00-1] A0A024RA32 ENST00000223122.4 [Q9NS00-1] ENST00000429911.5 Q9NS00 ENST00000402468.3 [Q9NS00-2] |