Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 7 studies | 22% ± 6% | |
fibroblast | 6 studies | 21% ± 7% | |
basal cell | 6 studies | 27% ± 10% | |
epithelial cell | 5 studies | 35% ± 15% | |
naive B cell | 4 studies | 16% ± 0% | |
B cell | 4 studies | 23% ± 4% | |
CD4-positive, alpha-beta T cell | 4 studies | 26% ± 8% | |
ciliated cell | 4 studies | 28% ± 7% | |
natural killer cell | 4 studies | 22% ± 4% | |
CD16-negative, CD56-bright natural killer cell, human | 3 studies | 18% ± 1% | |
naive thymus-derived CD8-positive, alpha-beta T cell | 3 studies | 18% ± 2% | |
connective tissue cell | 3 studies | 18% ± 1% | |
erythroblast | 3 studies | 32% ± 12% | |
GABAergic neuron | 3 studies | 21% ± 3% | |
glutamatergic neuron | 3 studies | 28% ± 7% | |
CD8-positive, alpha-beta T cell | 3 studies | 23% ± 6% | |
dendritic cell | 3 studies | 31% ± 9% | |
abnormal cell | 3 studies | 20% ± 4% | |
plasmacytoid dendritic cell | 3 studies | 22% ± 5% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 1081.30 | 1445 / 1445 | 100% | 26.96 | 183 / 183 |
ovary | 100% | 1103.42 | 180 / 180 | 100% | 24.38 | 430 / 430 |
uterus | 100% | 1198.79 | 170 / 170 | 100% | 37.42 | 458 / 459 |
breast | 100% | 1243.09 | 459 / 459 | 100% | 27.14 | 1115 / 1118 |
lung | 100% | 980.22 | 576 / 578 | 100% | 34.70 | 1155 / 1155 |
brain | 100% | 767.36 | 2632 / 2642 | 100% | 15.15 | 705 / 705 |
prostate | 100% | 1008.23 | 245 / 245 | 99% | 17.16 | 499 / 502 |
thymus | 100% | 999.85 | 653 / 653 | 99% | 17.29 | 601 / 605 |
bladder | 100% | 1290.62 | 21 / 21 | 99% | 33.86 | 498 / 504 |
adrenal gland | 100% | 1171.94 | 258 / 258 | 99% | 17.05 | 227 / 230 |
stomach | 100% | 791.07 | 359 / 359 | 98% | 24.03 | 280 / 286 |
pancreas | 98% | 482.04 | 323 / 328 | 99% | 18.39 | 176 / 178 |
intestine | 100% | 971.34 | 966 / 966 | 97% | 25.64 | 512 / 527 |
skin | 100% | 1869.58 | 1809 / 1809 | 96% | 23.09 | 453 / 472 |
kidney | 100% | 761.78 | 89 / 89 | 94% | 11.51 | 848 / 901 |
liver | 100% | 528.36 | 226 / 226 | 93% | 12.02 | 377 / 406 |
adipose | 100% | 1279.34 | 1204 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 27.35 | 29 / 29 |
spleen | 100% | 1052.35 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 29.75 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 19.22 | 1 / 1 |
blood vessel | 100% | 1033.23 | 1334 / 1335 | 0% | 0 | 0 / 0 |
muscle | 99% | 555.76 | 791 / 803 | 0% | 0 | 0 / 0 |
heart | 98% | 553.11 | 848 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 63% | 7.71 | 50 / 80 |
peripheral blood | 48% | 731.52 | 449 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0000027 | Biological process | ribosomal large subunit assembly |
GO_0006364 | Biological process | rRNA processing |
GO_0005730 | Cellular component | nucleolus |
GO_0005694 | Cellular component | chromosome |
GO_0019843 | Molecular function | rRNA binding |
GO_0005515 | Molecular function | protein binding |
GO_0003723 | Molecular function | RNA binding |
Gene name | BRIX1 |
Protein name | Ribosome biogenesis protein BRX1 homolog (Brix domain-containing protein 2) |
Synonyms | BRIX BXDC2 |
Description | FUNCTION: Required for biogenesis of the 60S ribosomal subunit. |
Accessions | ENST00000336767.6 Q8TDN6 |