Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 25 studies | 30% ± 14% | |
astrocyte | 20 studies | 52% ± 21% | |
fibroblast | 19 studies | 25% ± 10% | |
smooth muscle cell | 16 studies | 21% ± 4% | |
ciliated cell | 16 studies | 29% ± 13% | |
oligodendrocyte | 15 studies | 41% ± 14% | |
macrophage | 14 studies | 32% ± 15% | |
epithelial cell | 13 studies | 36% ± 20% | |
oligodendrocyte precursor cell | 13 studies | 34% ± 15% | |
basal cell | 11 studies | 35% ± 14% | |
glutamatergic neuron | 11 studies | 39% ± 22% | |
microglial cell | 11 studies | 24% ± 8% | |
type I pneumocyte | 10 studies | 35% ± 10% | |
GABAergic neuron | 10 studies | 43% ± 23% | |
pericyte | 10 studies | 25% ± 11% | |
dendritic cell | 7 studies | 29% ± 8% | |
neuron | 7 studies | 37% ± 19% | |
interneuron | 7 studies | 47% ± 27% | |
retinal cone cell | 7 studies | 34% ± 13% | |
retinal rod cell | 7 studies | 32% ± 5% | |
secretory cell | 6 studies | 26% ± 9% | |
conventional dendritic cell | 6 studies | 20% ± 5% | |
club cell | 6 studies | 28% ± 10% | |
adipocyte | 6 studies | 28% ± 9% | |
Mueller cell | 6 studies | 35% ± 8% | |
type II pneumocyte | 6 studies | 23% ± 6% | |
retinal bipolar neuron | 5 studies | 28% ± 8% | |
retinal ganglion cell | 5 studies | 52% ± 19% | |
amacrine cell | 5 studies | 30% ± 8% | |
cardiac muscle cell | 5 studies | 42% ± 10% | |
mesothelial cell | 5 studies | 31% ± 10% | |
myeloid cell | 5 studies | 25% ± 7% | |
connective tissue cell | 5 studies | 26% ± 7% | |
goblet cell | 5 studies | 32% ± 18% | |
duct epithelial cell | 4 studies | 24% ± 13% | |
ionocyte | 4 studies | 26% ± 9% | |
respiratory goblet cell | 4 studies | 27% ± 10% | |
squamous epithelial cell | 4 studies | 46% ± 19% | |
pancreatic A cell | 4 studies | 37% ± 18% | |
capillary endothelial cell | 4 studies | 18% ± 2% | |
myofibroblast cell | 4 studies | 23% ± 6% | |
granule cell | 4 studies | 26% ± 6% | |
retina horizontal cell | 4 studies | 25% ± 6% | |
retinal pigment epithelial cell | 4 studies | 40% ± 15% | |
lymphocyte | 4 studies | 23% ± 6% | |
OFF-bipolar cell | 4 studies | 36% ± 8% | |
ON-bipolar cell | 4 studies | 29% ± 6% | |
endothelial cell of lymphatic vessel | 4 studies | 21% ± 6% | |
type B pancreatic cell | 3 studies | 44% ± 27% | |
glomerular endothelial cell | 3 studies | 21% ± 3% | |
GABAergic interneuron | 3 studies | 39% ± 8% | |
glial cell | 3 studies | 35% ± 5% | |
progenitor cell | 3 studies | 23% ± 8% | |
brush cell | 3 studies | 27% ± 9% | |
rod bipolar cell | 3 studies | 34% ± 6% | |
hepatocyte | 3 studies | 40% ± 19% | |
pancreatic ductal cell | 3 studies | 46% ± 23% | |
abnormal cell | 3 studies | 28% ± 15% | |
neural progenitor cell | 3 studies | 41% ± 12% | |
ependymal cell | 3 studies | 71% ± 13% | |
enteroendocrine cell | 3 studies | 28% ± 9% | |
chondrocyte | 3 studies | 21% ± 4% | |
Schwann cell | 3 studies | 31% ± 13% | |
kidney distal convoluted tubule epithelial cell | 3 studies | 34% ± 5% | |
kidney loop of Henle epithelial cell | 3 studies | 24% ± 5% | |
mucus secreting cell | 3 studies | 34% ± 5% | |
myoepithelial cell | 3 studies | 31% ± 16% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 18 studies | 38% ± 19% | |
eye | 10 studies | 31% ± 11% | |
lung | 8 studies | 25% ± 9% | |
heart | 4 studies | 27% ± 6% | |
intestine | 4 studies | 20% ± 6% | |
kidney | 4 studies | 25% ± 6% | |
pancreas | 3 studies | 42% ± 20% | |
liver | 3 studies | 30% ± 14% | |
adipose | 3 studies | 26% ± 2% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 6590.00 | 1445 / 1445 | 99% | 26.09 | 182 / 183 |
brain | 100% | 6811.17 | 2642 / 2642 | 98% | 20.63 | 688 / 705 |
lung | 100% | 4408.70 | 576 / 578 | 97% | 14.04 | 1117 / 1155 |
stomach | 100% | 3421.29 | 359 / 359 | 94% | 14.53 | 270 / 286 |
intestine | 100% | 5315.24 | 966 / 966 | 93% | 12.23 | 491 / 527 |
breast | 100% | 4577.24 | 459 / 459 | 89% | 14.26 | 990 / 1118 |
pancreas | 99% | 2116.50 | 324 / 328 | 89% | 12.70 | 158 / 178 |
skin | 100% | 4560.29 | 1803 / 1809 | 88% | 16.17 | 414 / 472 |
kidney | 100% | 3847.51 | 89 / 89 | 85% | 12.57 | 764 / 901 |
thymus | 100% | 5683.87 | 653 / 653 | 84% | 13.89 | 511 / 605 |
prostate | 100% | 5215.70 | 245 / 245 | 82% | 10.73 | 412 / 502 |
ovary | 100% | 5120.33 | 180 / 180 | 81% | 6.40 | 349 / 430 |
uterus | 100% | 4758.90 | 170 / 170 | 79% | 9.10 | 364 / 459 |
bladder | 100% | 5317.52 | 21 / 21 | 76% | 9.09 | 384 / 504 |
adrenal gland | 100% | 3696.59 | 258 / 258 | 61% | 4.84 | 140 / 230 |
liver | 100% | 2149.10 | 225 / 226 | 47% | 3.26 | 190 / 406 |
blood vessel | 100% | 5607.35 | 1335 / 1335 | 0% | 0 | 0 / 0 |
spleen | 100% | 3570.75 | 241 / 241 | 0% | 0 | 0 / 0 |
adipose | 100% | 4424.23 | 1203 / 1204 | 0% | 0 | 0 / 0 |
muscle | 100% | 2711.09 | 799 / 803 | 0% | 0 | 0 / 0 |
heart | 97% | 4133.19 | 833 / 861 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 73% | 12.52 | 33 / 45 |
eye | 0% | 0 | 0 / 0 | 59% | 4.99 | 47 / 80 |
lymph node | 0% | 0 | 0 / 0 | 31% | 1.57 | 9 / 29 |
peripheral blood | 21% | 532.44 | 199 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0007266 | Biological process | Rho protein signal transduction |
GO_0030879 | Biological process | mammary gland development |
GO_0002053 | Biological process | positive regulation of mesenchymal cell proliferation |
GO_0051056 | Biological process | regulation of small GTPase mediated signal transduction |
GO_0008361 | Biological process | regulation of cell size |
GO_0007155 | Biological process | cell adhesion |
GO_0010634 | Biological process | positive regulation of epithelial cell migration |
GO_0010631 | Biological process | epithelial cell migration |
GO_0005783 | Cellular component | endoplasmic reticulum |
GO_0005829 | Cellular component | cytosol |
GO_0005886 | Cellular component | plasma membrane |
GO_0005737 | Cellular component | cytoplasm |
GO_0042169 | Molecular function | SH2 domain binding |
GO_0005515 | Molecular function | protein binding |
GO_0005096 | Molecular function | GTPase activator activity |
GO_0003924 | Molecular function | GTPase activity |
Gene name | ARHGAP5 |
Protein name | Alternative protein ARHGAP5 Rho GTPase activating protein 5 ARHGAP5 Rho GTPase-activating protein 5 (Rho-type GTPase-activating protein 5) (p190-B) |
Synonyms | RHOGAP5 |
Description | FUNCTION: GTPase-activating protein for Rho family members . . |
Accessions | ENST00000396582.6 [Q13017-3] G3V444 G3V360 A0A2X0SYS0 ENST00000555814.1 H0YK04 ENST00000539826.6 [Q13017-1] ENST00000433497.5 [Q13017-4] ENST00000556611.5 [Q13017-2] ENST00000556191.5 G3V5I7 ENST00000557643.1 L8E796 ENST00000554090.1 ENST00000345122.8 [Q13017-1] Q13017 |