Name | Number of supported studies | Average coverage | |
---|---|---|---|
ciliated cell | 13 studies | 31% ± 11% | |
endothelial cell | 13 studies | 27% ± 13% | |
macrophage | 13 studies | 32% ± 16% | |
astrocyte | 12 studies | 37% ± 17% | |
microglial cell | 11 studies | 50% ± 16% | |
oligodendrocyte precursor cell | 11 studies | 36% ± 15% | |
oligodendrocyte | 10 studies | 29% ± 10% | |
GABAergic neuron | 8 studies | 34% ± 16% | |
adipocyte | 7 studies | 28% ± 10% | |
fibroblast | 7 studies | 22% ± 5% | |
glutamatergic neuron | 6 studies | 41% ± 22% | |
interneuron | 6 studies | 38% ± 21% | |
epithelial cell | 5 studies | 32% ± 10% | |
endothelial cell of lymphatic vessel | 5 studies | 21% ± 3% | |
goblet cell | 5 studies | 25% ± 15% | |
retinal bipolar neuron | 4 studies | 21% ± 4% | |
retinal pigment epithelial cell | 4 studies | 31% ± 16% | |
cardiac muscle cell | 4 studies | 21% ± 2% | |
Mueller cell | 4 studies | 18% ± 2% | |
myeloid cell | 4 studies | 25% ± 5% | |
smooth muscle cell | 4 studies | 17% ± 1% | |
neuron | 3 studies | 36% ± 14% | |
rod bipolar cell | 3 studies | 41% ± 14% | |
mast cell | 3 studies | 22% ± 3% | |
monocyte | 3 studies | 18% ± 2% | |
lymphocyte | 3 studies | 20% ± 5% | |
pericyte | 3 studies | 17% ± 2% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
stomach | 100% | 2983.44 | 359 / 359 | 100% | 36.12 | 286 / 286 |
esophagus | 100% | 2156.16 | 1443 / 1445 | 100% | 38.04 | 183 / 183 |
prostate | 100% | 3983.31 | 245 / 245 | 100% | 68.57 | 501 / 502 |
brain | 100% | 2891.75 | 2638 / 2642 | 100% | 68.12 | 704 / 705 |
intestine | 100% | 4052.76 | 966 / 966 | 99% | 35.63 | 522 / 527 |
breast | 100% | 5126.66 | 459 / 459 | 99% | 39.36 | 1107 / 1118 |
lung | 99% | 2565.62 | 574 / 578 | 99% | 30.55 | 1148 / 1155 |
ovary | 100% | 3483.02 | 180 / 180 | 98% | 24.43 | 423 / 430 |
uterus | 100% | 3592.78 | 170 / 170 | 98% | 30.43 | 450 / 459 |
pancreas | 99% | 1699.44 | 325 / 328 | 99% | 31.30 | 176 / 178 |
kidney | 100% | 2055.82 | 89 / 89 | 97% | 30.08 | 877 / 901 |
bladder | 100% | 1992.00 | 21 / 21 | 97% | 26.48 | 488 / 504 |
thymus | 100% | 1998.31 | 651 / 653 | 97% | 20.85 | 586 / 605 |
skin | 100% | 7557.67 | 1809 / 1809 | 95% | 31.37 | 447 / 472 |
adrenal gland | 100% | 3827.78 | 258 / 258 | 86% | 18.43 | 198 / 230 |
liver | 93% | 1083.05 | 210 / 226 | 83% | 15.77 | 337 / 406 |
adipose | 100% | 4322.18 | 1204 / 1204 | 0% | 0 | 0 / 0 |
spleen | 100% | 2744.76 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 30.46 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 10.84 | 1 / 1 |
blood vessel | 100% | 2607.59 | 1329 / 1335 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 94% | 25.30 | 75 / 80 |
heart | 91% | 1353.11 | 781 / 861 | 0% | 0 | 0 / 0 |
muscle | 91% | 1110.39 | 728 / 803 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 79% | 11.03 | 23 / 29 |
peripheral blood | 73% | 984.80 | 677 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0009631 | Biological process | cold acclimation |
GO_1900077 | Biological process | negative regulation of cellular response to insulin stimulus |
GO_0035729 | Biological process | cellular response to hepatocyte growth factor stimulus |
GO_0007165 | Biological process | signal transduction |
GO_0033211 | Biological process | adiponectin-activated signaling pathway |
GO_0002024 | Biological process | diet induced thermogenesis |
GO_2000045 | Biological process | regulation of G1/S transition of mitotic cell cycle |
GO_1900016 | Biological process | negative regulation of cytokine production involved in inflammatory response |
GO_0051289 | Biological process | protein homotetramerization |
GO_1905303 | Biological process | positive regulation of macropinocytosis |
GO_0045088 | Biological process | regulation of innate immune response |
GO_0046322 | Biological process | negative regulation of fatty acid oxidation |
GO_0006606 | Biological process | protein import into nucleus |
GO_0046325 | Biological process | negative regulation of glucose import |
GO_0120162 | Biological process | positive regulation of cold-induced thermogenesis |
GO_0010762 | Biological process | regulation of fibroblast migration |
GO_2000178 | Biological process | negative regulation of neural precursor cell proliferation |
GO_0060100 | Biological process | positive regulation of phagocytosis, engulfment |
GO_0034143 | Biological process | regulation of toll-like receptor 4 signaling pathway |
GO_0007179 | Biological process | transforming growth factor beta receptor signaling pathway |
GO_1905451 | Biological process | positive regulation of Fc-gamma receptor signaling pathway involved in phagocytosis |
GO_0050768 | Biological process | negative regulation of neurogenesis |
GO_0042593 | Biological process | glucose homeostasis |
GO_0023052 | Biological process | signaling |
GO_0001726 | Cellular component | ruffle |
GO_0032587 | Cellular component | ruffle membrane |
GO_0005886 | Cellular component | plasma membrane |
GO_0031410 | Cellular component | cytoplasmic vesicle |
GO_0032009 | Cellular component | early phagosome |
GO_0016020 | Cellular component | membrane |
GO_0044354 | Cellular component | macropinosome |
GO_0031901 | Cellular component | early endosome membrane |
GO_0036186 | Cellular component | early phagosome membrane |
GO_0070062 | Cellular component | extracellular exosome |
GO_0010008 | Cellular component | endosome membrane |
GO_0005768 | Cellular component | endosome |
GO_0031982 | Cellular component | vesicle |
GO_0005634 | Cellular component | nucleus |
GO_0042803 | Molecular function | protein homodimerization activity |
GO_0044877 | Molecular function | protein-containing complex binding |
GO_0042802 | Molecular function | identical protein binding |
GO_0001786 | Molecular function | phosphatidylserine binding |
GO_0035091 | Molecular function | phosphatidylinositol binding |
GO_0005515 | Molecular function | protein binding |
Gene name | APPL2 |
Protein name | Adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 2 DCC-interacting protein 13-beta (Dip13-beta) (Adapter protein containing PH domain, PTB domain and leucine zipper motif 2) |
Synonyms | DIP13B |
Description | FUNCTION: Multifunctional adapter protein that binds to various membrane receptors, nuclear factors and signaling proteins to regulate many processes, such as cell proliferation, immune response, endosomal trafficking and cell metabolism . Regulates signaling pathway leading to cell proliferation through interaction with RAB5A and subunits of the NuRD/MeCP1 complex . Plays a role in immune response by modulating phagocytosis, inflammatory and innate immune responses. In macrophages, enhances Fc-gamma receptor-mediated phagocytosis through interaction with RAB31 leading to activation of PI3K/Akt signaling. In response to LPS, modulates inflammatory responses by playing a key role on the regulation of TLR4 signaling and in the nuclear translocation of RELA/NF-kappa-B p65 and the secretion of pro- and anti-inflammatory cytokines. Also functions as a negative regulator of innate immune response via inhibition of AKT1 signaling pathway by forming a complex with APPL1 and PIK3R1 (By similarity). Plays a role in endosomal trafficking of TGFBR1 from the endosomes to the nucleus . Plays a role in cell metabolism by regulating adiponecting ans insulin signaling pathways and adaptative thermogenesis (By similarity). In muscle, negatively regulates adiponectin-simulated glucose uptake and fatty acid oxidation by inhibiting adiponectin signaling pathway through APPL1 sequestration thereby antagonizing APPL1 action (By similarity). In muscles, negativeliy regulates insulin-induced plasma membrane recruitment of GLUT4 and glucose uptake through interaction with TBC1D1 . Plays a role in cold and diet-induced adaptive thermogenesis by activating ventromedial hypothalamus (VMH) neurons throught AMPK inhibition which enhances sympathetic outflow to subcutaneous white adipose tissue (sWAT), sWAT beiging and cold tolerance (By similarity). Also plays a role in other signaling pathways namely Wnt/beta-catenin, HGF and glucocorticoid receptor signaling (By similarity). Positive regulator of beta-catenin/TCF-dependent transcription through direct interaction with RUVBL2/reptin resulting in the relief of RUVBL2-mediated repression of beta-catenin/TCF target genes by modulating the interactions within the beta-catenin-reptin-HDAC complex . May affect adult neurogenesis in hippocampus and olfactory system via regulating the sensitivity of glucocorticoid receptor. Required for fibroblast migration through HGF cell signaling (By similarity). . |
Accessions | F8VS86 ENST00000553109.1 Q8NEU8 ENST00000553097.5 ENST00000551662.5 [Q8NEU8-3] ENST00000549974.5 ENST00000546731.1 F8W124 ENST00000539978.6 [Q8NEU8-2] H0YH86 ENST00000549056.1 F8VXB0 ENST00000547439.5 ENST00000258530.8 [Q8NEU8-1] F8VWV2 F8VR68 |