Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
lung | 100% | 3200.43 | 578 / 578 | 100% | 12.75 | 1152 / 1155 |
brain | 100% | 2658.43 | 2636 / 2642 | 100% | 21.07 | 702 / 705 |
esophagus | 99% | 903.43 | 1434 / 1445 | 100% | 15.92 | 183 / 183 |
intestine | 100% | 1040.85 | 964 / 966 | 99% | 12.27 | 520 / 527 |
thymus | 100% | 1099.88 | 651 / 653 | 98% | 10.02 | 593 / 605 |
prostate | 100% | 900.43 | 244 / 245 | 98% | 11.91 | 492 / 502 |
breast | 100% | 1399.82 | 459 / 459 | 97% | 13.07 | 1090 / 1118 |
uterus | 100% | 1055.93 | 170 / 170 | 96% | 11.33 | 441 / 459 |
bladder | 100% | 891.76 | 21 / 21 | 95% | 9.83 | 479 / 504 |
kidney | 100% | 1101.90 | 89 / 89 | 95% | 11.18 | 853 / 901 |
pancreas | 95% | 739.94 | 311 / 328 | 99% | 10.52 | 176 / 178 |
skin | 100% | 1200.30 | 1805 / 1809 | 94% | 13.53 | 442 / 472 |
ovary | 98% | 757.94 | 177 / 180 | 95% | 8.06 | 408 / 430 |
stomach | 95% | 741.51 | 340 / 359 | 97% | 12.42 | 278 / 286 |
adrenal gland | 99% | 834.16 | 255 / 258 | 88% | 13.64 | 202 / 230 |
liver | 73% | 418.21 | 166 / 226 | 62% | 3.71 | 251 / 406 |
lymph node | 0% | 0 | 0 / 0 | 100% | 18.63 | 29 / 29 |
muscle | 100% | 1601.84 | 803 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 100% | 5620.75 | 929 / 929 | 0% | 0 | 0 / 0 |
spleen | 100% | 3202.67 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 16.49 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 3.12 | 1 / 1 |
adipose | 100% | 1713.30 | 1203 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 1400.88 | 1332 / 1335 | 0% | 0 | 0 / 0 |
heart | 96% | 1590.12 | 826 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 76% | 6.52 | 61 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0007628 | Biological process | adult walking behavior |
GO_0001754 | Biological process | eye photoreceptor cell differentiation |
GO_0008285 | Biological process | negative regulation of cell population proliferation |
GO_0035609 | Biological process | C-terminal protein deglutamylation |
GO_0021702 | Biological process | cerebellar Purkinje cell differentiation |
GO_0060041 | Biological process | retina development in camera-type eye |
GO_0050905 | Biological process | neuromuscular process |
GO_0035610 | Biological process | protein side chain deglutamylation |
GO_0021772 | Biological process | olfactory bulb development |
GO_0098957 | Biological process | anterograde axonal transport of mitochondrion |
GO_0007005 | Biological process | mitochondrion organization |
GO_2000060 | Biological process | positive regulation of ubiquitin-dependent protein catabolic process |
GO_0098958 | Biological process | retrograde axonal transport of mitochondrion |
GO_0006508 | Biological process | proteolysis |
GO_0021954 | Biological process | central nervous system neuron development |
GO_0035608 | Biological process | protein deglutamylation |
GO_0005730 | Cellular component | nucleolus |
GO_0005739 | Cellular component | mitochondrion |
GO_0005829 | Cellular component | cytosol |
GO_0005737 | Cellular component | cytoplasm |
GO_0043231 | Cellular component | intracellular membrane-bounded organelle |
GO_1904115 | Cellular component | axon cytoplasm |
GO_0005634 | Cellular component | nucleus |
GO_0015631 | Molecular function | tubulin binding |
GO_0004181 | Molecular function | metallocarboxypeptidase activity |
GO_0008270 | Molecular function | zinc ion binding |
Gene name | AGTPBP1 |
Protein name | Cytosolic carboxypeptidase 1 (EC 3.4.17.-) (EC 3.4.17.24) (ATP/GTP-binding protein 1) (Nervous system nuclear protein induced by axotomy protein 1 homolog) (Protein deglutamylase CCP1) Cytosolic carboxypeptidase 1 (EC 3.4.17.24) (ATP/GTP-binding protein 1) (Protein deglutamylase CCP1) |
Synonyms | KIAA1035 NNA1 CCP1 |
Description | FUNCTION: Metallocarboxypeptidase that mediates protein deglutamylation of tubulin and non-tubulin target proteins . Catalyzes the removal of polyglutamate side chains present on the gamma-carboxyl group of glutamate residues within the C-terminal tail of alpha- and beta-tubulin . Specifically cleaves tubulin long-side-chains, while it is not able to remove the branching point glutamate . Also catalyzes the removal of polyglutamate residues from the carboxy-terminus of alpha-tubulin as well as non-tubulin proteins such as MYLK . Involved in KLF4 deglutamylation which promotes KLF4 proteasome-mediated degradation, thereby negatively regulating cell pluripotency maintenance and embryogenesis . . |
Accessions | ENST00000357081.8 [Q9UPW5-1] J3KNS1 ENST00000337006.8 ENST00000376083.7 [Q9UPW5-2] ENST00000628899.1 [Q9UPW5-3] Q9UPW5 |