Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 15 studies | 38% ± 15% | |
endothelial cell of lymphatic vessel | 7 studies | 36% ± 15% | |
GABAergic neuron | 7 studies | 34% ± 19% | |
oligodendrocyte precursor cell | 7 studies | 28% ± 13% | |
astrocyte | 6 studies | 28% ± 8% | |
hepatocyte | 5 studies | 54% ± 26% | |
glutamatergic neuron | 5 studies | 41% ± 17% | |
interneuron | 5 studies | 31% ± 16% | |
fibroblast | 5 studies | 23% ± 7% | |
granule cell | 4 studies | 28% ± 3% | |
capillary endothelial cell | 4 studies | 27% ± 10% | |
cardiac muscle cell | 4 studies | 22% ± 4% | |
squamous epithelial cell | 3 studies | 39% ± 17% | |
endothelial cell of sinusoid | 3 studies | 21% ± 5% | |
epithelial cell | 3 studies | 23% ± 5% | |
vein endothelial cell | 3 studies | 33% ± 20% | |
retinal rod cell | 3 studies | 66% ± 10% | |
endothelial cell of vascular tree | 3 studies | 42% ± 14% | |
cholangiocyte | 3 studies | 52% ± 27% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
liver | 99% | 12580.04 | 224 / 226 | 97% | 24.66 | 393 / 406 |
brain | 95% | 4581.96 | 2520 / 2642 | 96% | 27.39 | 680 / 705 |
breast | 100% | 13646.89 | 458 / 459 | 78% | 17.94 | 871 / 1118 |
kidney | 82% | 3277.94 | 73 / 89 | 83% | 38.29 | 746 / 901 |
esophagus | 98% | 5776.83 | 1410 / 1445 | 67% | 8.79 | 123 / 183 |
bladder | 95% | 3081.05 | 20 / 21 | 64% | 10.91 | 322 / 504 |
lung | 99% | 4715.31 | 574 / 578 | 54% | 5.80 | 620 / 1155 |
prostate | 64% | 1744.30 | 157 / 245 | 87% | 8.41 | 435 / 502 |
skin | 68% | 3872.05 | 1237 / 1809 | 81% | 17.41 | 383 / 472 |
adrenal gland | 55% | 1136.90 | 142 / 258 | 78% | 16.38 | 179 / 230 |
uterus | 81% | 2664.95 | 138 / 170 | 47% | 7.06 | 214 / 459 |
thymus | 86% | 2105.86 | 564 / 653 | 29% | 2.40 | 177 / 605 |
intestine | 66% | 1781.93 | 639 / 966 | 36% | 4.60 | 188 / 527 |
adipose | 100% | 15323.89 | 1204 / 1204 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 22.27 | 1 / 1 |
heart | 100% | 10822.13 | 859 / 861 | 0% | 0 | 0 / 0 |
muscle | 100% | 5579.45 | 799 / 803 | 0% | 0 | 0 / 0 |
pancreas | 1% | 16.50 | 3 / 328 | 93% | 24.55 | 165 / 178 |
blood vessel | 88% | 2980.19 | 1180 / 1335 | 0% | 0 | 0 / 0 |
spleen | 78% | 1679.41 | 188 / 241 | 0% | 0 | 0 / 0 |
stomach | 29% | 647.87 | 104 / 359 | 40% | 4.54 | 113 / 286 |
tonsil | 0% | 0 | 0 / 0 | 49% | 5.70 | 22 / 45 |
lymph node | 0% | 0 | 0 / 0 | 34% | 1.82 | 10 / 29 |
ovary | 14% | 417.04 | 25 / 180 | 4% | 0.26 | 18 / 430 |
eye | 0% | 0 | 0 / 0 | 15% | 1.46 | 12 / 80 |
peripheral blood | 5% | 92.80 | 49 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0060271 | Biological process | cilium assembly |
GO_0006366 | Biological process | transcription by RNA polymerase II |
GO_1903955 | Biological process | positive regulation of protein targeting to mitochondrion |
GO_0007010 | Biological process | cytoskeleton organization |
GO_0045944 | Biological process | positive regulation of transcription by RNA polymerase II |
GO_0030032 | Biological process | lamellipodium assembly |
GO_0098978 | Cellular component | glutamatergic synapse |
GO_0001725 | Cellular component | stress fiber |
GO_0015629 | Cellular component | actin cytoskeleton |
GO_0030027 | Cellular component | lamellipodium |
GO_0005737 | Cellular component | cytoplasm |
GO_0051015 | Molecular function | actin filament binding |
GO_0005515 | Molecular function | protein binding |
GO_0046872 | Molecular function | metal ion binding |
Gene name | ABLIM3 |
Protein name | Actin binding LIM protein family member 3 Actin-binding LIM protein 3 (abLIM-3) (Actin-binding LIM protein family member 3) |
Synonyms | KIAA0843 HMFN1661 |
Description | FUNCTION: May act as scaffold protein. May stimulate ABRA activity and ABRA-dependent SRF transcriptional activity. . |
Accessions | ENST00000309868.12 [O94929-1] ENST00000506113.5 [O94929-1] A0A0C4DGA7 ENST00000504238.5 [O94929-2] ENST00000517451.5 [O94929-4] D6RHE7 ENST00000515171.5 ENST00000326685.11 [O94929-3] O94929 ENST00000508983.5 |