Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 2569.79 | 1445 / 1445 | 100% | 47.66 | 183 / 183 |
ovary | 100% | 2894.49 | 180 / 180 | 100% | 26.82 | 430 / 430 |
breast | 100% | 3026.62 | 459 / 459 | 100% | 41.06 | 1117 / 1118 |
lung | 100% | 2488.69 | 577 / 578 | 100% | 36.52 | 1155 / 1155 |
prostate | 100% | 2139.47 | 245 / 245 | 100% | 28.79 | 500 / 502 |
bladder | 100% | 2608.81 | 21 / 21 | 99% | 38.86 | 501 / 504 |
uterus | 100% | 2481.90 | 170 / 170 | 99% | 35.98 | 456 / 459 |
brain | 99% | 1825.75 | 2624 / 2642 | 100% | 31.42 | 705 / 705 |
thymus | 100% | 2300.87 | 653 / 653 | 99% | 22.88 | 599 / 605 |
pancreas | 100% | 2139.45 | 328 / 328 | 99% | 25.52 | 176 / 178 |
intestine | 100% | 2096.94 | 964 / 966 | 99% | 40.85 | 521 / 527 |
stomach | 100% | 1868.82 | 359 / 359 | 98% | 39.48 | 281 / 286 |
adrenal gland | 100% | 2497.91 | 258 / 258 | 97% | 19.43 | 224 / 230 |
kidney | 100% | 1608.73 | 89 / 89 | 97% | 21.91 | 876 / 901 |
skin | 100% | 4548.34 | 1809 / 1809 | 97% | 40.14 | 458 / 472 |
liver | 100% | 1771.67 | 226 / 226 | 95% | 15.59 | 387 / 406 |
lymph node | 0% | 0 | 0 / 0 | 100% | 34.88 | 29 / 29 |
muscle | 100% | 2575.49 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 2448.71 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 35.87 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 19.21 | 1 / 1 |
blood vessel | 100% | 2191.60 | 1334 / 1335 | 0% | 0 | 0 / 0 |
adipose | 100% | 3281.87 | 1203 / 1204 | 0% | 0 | 0 / 0 |
heart | 96% | 1759.49 | 828 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 91% | 18.02 | 73 / 80 |
peripheral blood | 49% | 2299.79 | 455 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0000054 | Biological process | ribosomal subunit export from nucleus |
GO_0006413 | Biological process | translational initiation |
GO_0072344 | Biological process | rescue of stalled ribosome |
GO_0032790 | Biological process | ribosome disassembly |
GO_0006417 | Biological process | regulation of translation |
GO_0060702 | Biological process | negative regulation of endoribonuclease activity |
GO_0006415 | Biological process | translational termination |
GO_0022626 | Cellular component | cytosolic ribosome |
GO_0016020 | Cellular component | membrane |
GO_0005739 | Cellular component | mitochondrion |
GO_0005829 | Cellular component | cytosol |
GO_0005759 | Cellular component | mitochondrial matrix |
GO_0005737 | Cellular component | cytoplasm |
GO_0060698 | Molecular function | endoribonuclease inhibitor activity |
GO_0017111 | Molecular function | ribonucleoside triphosphate phosphatase activity |
GO_0043273 | Molecular function | CTPase activity |
GO_0043024 | Molecular function | ribosomal small subunit binding |
GO_0005506 | Molecular function | iron ion binding |
GO_0005524 | Molecular function | ATP binding |
GO_0005515 | Molecular function | protein binding |
GO_0051539 | Molecular function | 4 iron, 4 sulfur cluster binding |
GO_0016887 | Molecular function | ATP hydrolysis activity |
GO_0003924 | Molecular function | GTPase activity |
Gene name | ABCE1 |
Protein name | ATP binding cassette subfamily E member 1 ATP-binding cassette sub-family E member 1 (EC 3.6.5.-) (2'-5'-oligoadenylate-binding protein) (HuHP68) (RNase L inhibitor) (Ribonuclease 4 inhibitor) (RNS4I) |
Synonyms | RNASEL1 OK/SW-cl.40 RNASELI RLI RNS4I |
Description | FUNCTION: Nucleoside-triphosphatase (NTPase) involved in ribosome recycling by mediating ribosome disassembly . Able to hydrolyze ATP, GTP, UTP and CTP . Splits ribosomes into free 60S subunits and tRNA- and mRNA-bound 40S subunits . Acts either after canonical termination facilitated by release factors (ETF1/eRF1) or after recognition of stalled and vacant ribosomes by mRNA surveillance factors (PELO/Pelota) . Involved in the No-Go Decay (NGD) pathway: recruited to stalled ribosomes by the Pelota-HBS1L complex, and drives the disassembly of stalled ribosomes, followed by degradation of damaged mRNAs as part of the NGD pathway . Also plays a role in quality control of translation of mitochondrial outer membrane-localized mRNA . As part of the PINK1-regulated signaling, ubiquitinated by CNOT4 upon mitochondria damage; this modification generates polyubiquitin signals that recruit autophagy receptors to the mitochondrial outer membrane and initiate mitophagy . RNASEL-specific protein inhibitor which antagonizes the binding of 2-5A (5'-phosphorylated 2',5'-linked oligoadenylates) to RNASEL . Negative regulator of the anti-viral effect of the interferon-regulated 2-5A/RNASEL pathway . .; FUNCTION: (Microbial infection) May act as a chaperone for post-translational events during HIV-1 capsid assembly. .; FUNCTION: (Microbial infection) Plays a role in the down-regulation of the 2-5A/RNASEL pathway during encephalomyocarditis virus (EMCV) and HIV-1 infections. . |
Accessions | ENST00000296577.9 H0Y990 D6R9I9 ENST00000507193.5 D6RGF4 P61221 ENST00000504292.1 ENST00000502586.5 |