Name | Number of supported studies | Average coverage | |
---|---|---|---|
astrocyte | 18 studies | 38% ± 16% | |
oligodendrocyte | 14 studies | 38% ± 13% | |
oligodendrocyte precursor cell | 13 studies | 45% ± 18% | |
endothelial cell | 12 studies | 26% ± 14% | |
GABAergic neuron | 9 studies | 50% ± 18% | |
adipocyte | 7 studies | 27% ± 5% | |
glutamatergic neuron | 6 studies | 30% ± 11% | |
epithelial cell | 6 studies | 31% ± 12% | |
interneuron | 6 studies | 61% ± 13% | |
club cell | 6 studies | 34% ± 18% | |
type I pneumocyte | 6 studies | 31% ± 11% | |
type II pneumocyte | 6 studies | 23% ± 7% | |
retina horizontal cell | 6 studies | 39% ± 16% | |
retinal cone cell | 6 studies | 32% ± 14% | |
neuron | 5 studies | 49% ± 19% | |
amacrine cell | 5 studies | 36% ± 15% | |
Mueller cell | 5 studies | 46% ± 21% | |
fibroblast | 5 studies | 21% ± 5% | |
granule cell | 4 studies | 31% ± 10% | |
retinal bipolar neuron | 4 studies | 32% ± 14% | |
cardiac muscle cell | 4 studies | 18% ± 3% | |
ciliated cell | 4 studies | 30% ± 9% | |
retinal rod cell | 4 studies | 38% ± 12% | |
endothelial cell of lymphatic vessel | 4 studies | 28% ± 8% | |
GABAergic interneuron | 3 studies | 41% ± 7% | |
progenitor cell | 3 studies | 35% ± 6% | |
ON-bipolar cell | 3 studies | 43% ± 21% | |
glycinergic amacrine cell | 3 studies | 36% ± 9% | |
rod bipolar cell | 3 studies | 42% ± 19% | |
basal cell | 3 studies | 35% ± 11% | |
retinal pigment epithelial cell | 3 studies | 31% ± 10% | |
ependymal cell | 3 studies | 45% ± 14% | |
respiratory goblet cell | 3 studies | 39% ± 18% | |
brush cell | 3 studies | 30% ± 8% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 100% | 1592.94 | 2639 / 2642 | 100% | 27.44 | 705 / 705 |
thymus | 100% | 2497.27 | 653 / 653 | 94% | 16.53 | 570 / 605 |
ovary | 99% | 1311.58 | 178 / 180 | 93% | 13.88 | 398 / 430 |
pancreas | 99% | 1166.45 | 326 / 328 | 90% | 9.88 | 161 / 178 |
kidney | 100% | 1339.04 | 89 / 89 | 89% | 14.69 | 804 / 901 |
prostate | 100% | 1219.26 | 245 / 245 | 85% | 8.47 | 427 / 502 |
stomach | 100% | 1076.16 | 359 / 359 | 82% | 7.30 | 234 / 286 |
intestine | 100% | 1454.64 | 966 / 966 | 80% | 6.65 | 422 / 527 |
adrenal gland | 100% | 2492.13 | 258 / 258 | 80% | 8.58 | 184 / 230 |
lung | 100% | 2602.62 | 578 / 578 | 75% | 7.50 | 871 / 1155 |
breast | 100% | 1917.92 | 459 / 459 | 72% | 7.92 | 810 / 1118 |
skin | 97% | 1141.60 | 1754 / 1809 | 75% | 8.82 | 355 / 472 |
esophagus | 99% | 1328.39 | 1434 / 1445 | 70% | 6.99 | 129 / 183 |
bladder | 90% | 677.62 | 19 / 21 | 57% | 4.78 | 287 / 504 |
uterus | 99% | 1139.48 | 168 / 170 | 41% | 5.29 | 190 / 459 |
liver | 75% | 343.28 | 170 / 226 | 37% | 2.74 | 149 / 406 |
adipose | 100% | 1371.86 | 1201 / 1204 | 0% | 0 | 0 / 0 |
spleen | 97% | 627.93 | 234 / 241 | 0% | 0 | 0 / 0 |
muscle | 94% | 849.50 | 753 / 803 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 90% | 16.50 | 26 / 29 |
heart | 89% | 1039.35 | 769 / 861 | 0% | 0 | 0 / 0 |
blood vessel | 85% | 722.24 | 1132 / 1335 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 63% | 5.15 | 50 / 80 |
peripheral blood | 53% | 716.15 | 490 / 929 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 27% | 1.83 | 12 / 45 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0000122 | Biological process | negative regulation of transcription by RNA polymerase II |
GO_0006357 | Biological process | regulation of transcription by RNA polymerase II |
GO_0005634 | Cellular component | nucleus |
GO_0046872 | Molecular function | metal ion binding |
Gene name | ZNF608 |
Protein name | Zinc finger protein 608 (Renal carcinoma antigen NY-REN-36) ZNF608 protein (Zinc finger protein 608) Zinc finger protein 608 |
Synonyms | KIAA1281 |
Description | FUNCTION: Transcription factor, which represses ZNF609 transcription. . |
Accessions | ENST00000513986.2 [Q9ULD9-1] Q9ULD9 ENST00000513986 A2RRB2 ENST00000306315.9 [Q9ULD9-1] ENST00000509799.5 A0A0C4DGB8 ENST00000505686.5 ENST00000504926.5 [Q9ULD9-2] ENST00000613878.4 B3KPE6 |