Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 12 studies | 31% ± 12% | |
fibroblast | 11 studies | 22% ± 6% | |
astrocyte | 6 studies | 33% ± 17% | |
oligodendrocyte precursor cell | 6 studies | 30% ± 12% | |
smooth muscle cell | 5 studies | 17% ± 1% | |
glutamatergic neuron | 5 studies | 48% ± 26% | |
oligodendrocyte | 5 studies | 34% ± 11% | |
natural killer cell | 4 studies | 21% ± 4% | |
myofibroblast cell | 4 studies | 17% ± 2% | |
neuron | 4 studies | 30% ± 12% | |
macrophage | 4 studies | 30% ± 6% | |
ciliated cell | 4 studies | 37% ± 18% | |
epithelial cell | 4 studies | 45% ± 24% | |
plasmacytoid dendritic cell | 4 studies | 22% ± 8% | |
B cell | 3 studies | 20% ± 3% | |
monocyte | 3 studies | 18% ± 1% | |
abnormal cell | 3 studies | 21% ± 3% | |
interneuron | 3 studies | 28% ± 14% | |
microglial cell | 3 studies | 31% ± 3% | |
pericyte | 3 studies | 26% ± 5% | |
classical monocyte | 3 studies | 17% ± 1% | |
endothelial cell of vascular tree | 3 studies | 20% ± 4% | |
GABAergic neuron | 3 studies | 58% ± 8% | |
enteroendocrine cell | 3 studies | 25% ± 9% | |
goblet cell | 3 studies | 24% ± 6% | |
naive B cell | 3 studies | 20% ± 2% | |
gamma-delta T cell | 3 studies | 26% ± 13% | |
regulatory T cell | 3 studies | 18% ± 3% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
lung | 100% | 55.46 | 578 / 578 | 1% | 0.02 | 11 / 1155 |
bladder | 100% | 28.24 | 21 / 21 | 1% | 0.01 | 3 / 504 |
uterus | 100% | 40.62 | 170 / 170 | 0% | 0.00 | 1 / 459 |
stomach | 100% | 32.62 | 358 / 359 | 0% | 0.01 | 1 / 286 |
breast | 100% | 42.07 | 457 / 459 | 0% | 0.01 | 5 / 1118 |
adrenal gland | 100% | 29.26 | 258 / 258 | 0% | 0 | 0 / 230 |
liver | 100% | 37.43 | 226 / 226 | 0% | 0 | 0 / 406 |
ovary | 100% | 32.93 | 180 / 180 | 0% | 0 | 0 / 430 |
prostate | 100% | 37.27 | 245 / 245 | 0% | 0 | 0 / 502 |
spleen | 100% | 41.49 | 241 / 241 | 0% | 0 | 0 / 0 |
pancreas | 99% | 23.14 | 326 / 328 | 1% | 0.01 | 1 / 178 |
intestine | 100% | 37.81 | 965 / 966 | 0% | 0 | 0 / 527 |
adipose | 100% | 39.91 | 1202 / 1204 | 0% | 0 | 0 / 0 |
thymus | 100% | 50.14 | 651 / 653 | 0% | 0 | 0 / 605 |
skin | 100% | 35.22 | 1803 / 1809 | 0% | 0 | 0 / 472 |
blood vessel | 99% | 33.04 | 1325 / 1335 | 0% | 0 | 0 / 0 |
esophagus | 99% | 30.00 | 1427 / 1445 | 0% | 0 | 0 / 183 |
kidney | 98% | 23.37 | 87 / 89 | 0% | 0.00 | 2 / 901 |
muscle | 95% | 17.66 | 764 / 803 | 0% | 0 | 0 / 0 |
heart | 92% | 17.73 | 791 / 861 | 0% | 0 | 0 / 0 |
brain | 81% | 14.49 | 2141 / 2642 | 0% | 0.00 | 1 / 705 |
peripheral blood | 74% | 18.17 | 684 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 80 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 45 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0016973 | Biological process | poly(A)+ mRNA export from nucleus |
GO_0005654 | Cellular component | nucleoplasm |
GO_0000346 | Cellular component | transcription export complex |
GO_0005515 | Molecular function | protein binding |
GO_0046872 | Molecular function | metal ion binding |
GO_0003723 | Molecular function | RNA binding |
Gene name | ZC3H11A |
Protein name | Zinc finger CCCH domain-containing protein 11A ZC3H11A protein Zinc finger CCCH-type containing 11A |
Synonyms | ZC3HDC11A KIAA0663 |
Description | FUNCTION: RNA-binding protein that interacts with purine-rich sequences and is involved in nuclear mRNA export; probably mediated by association with the TREX complex. .; FUNCTION: (Microbial infection) Plays a role in efficient growth of several nuclear-replicating viruses such as HIV-1, influenza virus or herpes simplex virus 1/HHV-1. Required for efficient viral mRNA Export. . |
Accessions | E9PQ61 ENST00000495527.5 ENST00000639812.1 ENST00000367210.3 E9PBY7 ENST00000367214.5 A0A1W2PPR9 Q0D2N5 C9J0L0 ENST00000367212.7 O75152 ENST00000332127.8 ENST00000432282.5 ENST00000638800.1 ENST00000453771.5 |