Name | Number of supported studies | Average coverage | |
---|---|---|---|
conventional dendritic cell | 15 studies | 31% ± 15% | |
macrophage | 11 studies | 24% ± 7% | |
classical monocyte | 10 studies | 25% ± 7% | |
dendritic cell | 8 studies | 40% ± 16% | |
platelet | 7 studies | 26% ± 13% | |
non-classical monocyte | 6 studies | 23% ± 6% | |
monocyte | 6 studies | 18% ± 4% | |
plasmacytoid dendritic cell | 6 studies | 23% ± 6% | |
plasmablast | 5 studies | 46% ± 26% | |
myeloid cell | 5 studies | 19% ± 5% | |
CD4-positive, alpha-beta T cell | 4 studies | 19% ± 1% | |
CD8-positive, alpha-beta T cell | 4 studies | 18% ± 2% | |
hematopoietic precursor cell | 3 studies | 21% ± 5% | |
plasma cell | 3 studies | 36% ± 9% | |
megakaryocyte | 3 studies | 46% ± 20% | |
ciliated cell | 3 studies | 24% ± 6% | |
endothelial cell | 3 studies | 26% ± 8% | |
epithelial cell | 3 studies | 29% ± 10% | |
intermediate monocyte | 3 studies | 21% ± 5% | |
hematopoietic stem cell | 3 studies | 22% ± 9% | |
neuron | 3 studies | 24% ± 8% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 3 studies | 20% ± 2% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
liver | 100% | 1606.62 | 226 / 226 | 100% | 29.51 | 406 / 406 |
ovary | 100% | 1505.67 | 180 / 180 | 100% | 40.29 | 430 / 430 |
uterus | 100% | 1501.05 | 170 / 170 | 100% | 38.63 | 459 / 459 |
brain | 100% | 1785.74 | 2640 / 2642 | 100% | 33.33 | 705 / 705 |
skin | 100% | 1925.84 | 1808 / 1809 | 100% | 46.21 | 471 / 472 |
esophagus | 100% | 1037.14 | 1441 / 1445 | 100% | 22.26 | 183 / 183 |
pancreas | 100% | 799.37 | 327 / 328 | 100% | 24.44 | 178 / 178 |
intestine | 100% | 1415.07 | 966 / 966 | 99% | 27.31 | 524 / 527 |
breast | 100% | 1433.99 | 459 / 459 | 99% | 29.60 | 1111 / 1118 |
thymus | 100% | 1172.34 | 652 / 653 | 100% | 19.80 | 602 / 605 |
stomach | 100% | 924.58 | 359 / 359 | 99% | 25.66 | 284 / 286 |
prostate | 100% | 1446.52 | 245 / 245 | 99% | 27.41 | 498 / 502 |
kidney | 100% | 1343.27 | 89 / 89 | 99% | 15.61 | 891 / 901 |
lung | 100% | 1978.40 | 577 / 578 | 99% | 29.93 | 1143 / 1155 |
adrenal gland | 100% | 1504.69 | 258 / 258 | 99% | 22.63 | 227 / 230 |
bladder | 100% | 1521.76 | 21 / 21 | 99% | 33.88 | 497 / 504 |
adipose | 100% | 1399.82 | 1204 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 34.18 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 37.92 | 29 / 29 |
spleen | 100% | 2488.02 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 33.29 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 15.37 | 1 / 1 |
peripheral blood | 100% | 2128.99 | 926 / 929 | 0% | 0 | 0 / 0 |
muscle | 99% | 985.70 | 796 / 803 | 0% | 0 | 0 / 0 |
heart | 99% | 1141.72 | 851 / 861 | 0% | 0 | 0 / 0 |
blood vessel | 98% | 1118.15 | 1306 / 1335 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0015031 | Biological process | protein transport |
GO_0006888 | Biological process | endoplasmic reticulum to Golgi vesicle-mediated transport |
GO_0006612 | Biological process | protein targeting to membrane |
GO_0033116 | Cellular component | endoplasmic reticulum-Golgi intermediate compartment membrane |
GO_0000139 | Cellular component | Golgi membrane |
GO_0005783 | Cellular component | endoplasmic reticulum |
GO_0005794 | Cellular component | Golgi apparatus |
GO_0030134 | Cellular component | COPII-coated ER to Golgi transport vesicle |
GO_0005793 | Cellular component | endoplasmic reticulum-Golgi intermediate compartment |
GO_0005789 | Cellular component | endoplasmic reticulum membrane |
GO_0005515 | Molecular function | protein binding |
Gene name | YIF1B |
Protein name | Hypothetical LOC541469 protein (Yip1 interacting factor homolog B (S. cerevisiae)) (cDNA: FLJ23477 fis, clone HSI15732) Protein YIF1 Protein YIF1B (YIP1-interacting factor homolog B) |
Synonyms | hCG_1785221 UNQ3073/PRO9905 PP4519 LOC541469 |
Description | FUNCTION: Functions in endoplasmic reticulum to Golgi vesicle-mediated transport and regulates the proper organization of the endoplasmic reticulum and the Golgi (By similarity). Plays a key role in targeting to neuronal dendrites receptors such as HTR1A (By similarity). Plays also a role in primary cilium and sperm flagellum assembly probably through protein transport to these compartments . . FUNCTION: Has a role in transport between endoplasmic reticulum and Golgi. . FUNCTION: Has a role in transport between endoplasmic reticulum and Golgi. . FUNCTION: Has a role in transport between endoplasmic reticulum and Golgi. . FUNCTION: Has a role in transport between endoplasmic reticulum and Golgi. . |
Accessions | ENST00000592694.5 [Q5BJH7-2] K7EJQ6 ENST00000329420.12 [Q5BJH7-6] K7EPQ7 ENST00000588002.5 K7ERY2 ENST00000337679.12 [Q5BJH7-4] Q5BJH7 ENST00000339413.11 [Q5BJH7-1] Q9H5F7 K7ERQ0 ENST00000392124.7 [Q5BJH7-2] ENST00000592246.5 ENST00000591755.5 [Q5BJH7-5] ENST00000587039.1 ENST00000589247.1 ENST00000591784.5 [Q5BJH7-2] |