Name | Number of supported studies | Average coverage | |
|---|---|---|---|
| endothelial cell | 11 studies | 24% ± 7% | |
| fibroblast | 9 studies | 20% ± 4% | |
| smooth muscle cell | 8 studies | 20% ± 2% | |
| pericyte | 6 studies | 19% ± 2% | |
| astrocyte | 6 studies | 24% ± 6% | |
| epithelial cell | 5 studies | 36% ± 16% | |
| adipocyte | 4 studies | 20% ± 4% | |
| oligodendrocyte | 4 studies | 23% ± 4% | |
| neuron | 3 studies | 26% ± 7% | |
| myeloid cell | 3 studies | 19% ± 4% | |
| amacrine cell | 3 studies | 31% ± 9% | |
| retina horizontal cell | 3 studies | 25% ± 7% | |
| cardiac muscle cell | 3 studies | 19% ± 1% | |
| ciliated cell | 3 studies | 27% ± 5% | |
| Mueller cell | 3 studies | 21% ± 3% | |
| erythroblast | 3 studies | 29% ± 17% | |
| endothelial cell of lymphatic vessel | 3 studies | 19% ± 4% | |
| type I pneumocyte | 3 studies | 20% ± 4% | |
| GABAergic neuron | 3 studies | 29% ± 6% | |
| glutamatergic neuron | 3 studies | 40% ± 8% | |
| oligodendrocyte precursor cell | 3 studies | 28% ± 2% | |
| basal cell | 3 studies | 28% ± 3% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
|---|---|---|---|---|---|---|
| bladder | 100% | 1454.81 | 21 / 21 | 100% | 20.57 | 504 / 504 |
| brain | 100% | 1371.18 | 2642 / 2642 | 100% | 37.90 | 705 / 705 |
| esophagus | 100% | 1365.16 | 1445 / 1445 | 100% | 28.71 | 183 / 183 |
| thymus | 100% | 1183.57 | 653 / 653 | 100% | 27.47 | 605 / 605 |
| uterus | 100% | 1924.26 | 170 / 170 | 100% | 23.27 | 459 / 459 |
| breast | 100% | 1385.19 | 459 / 459 | 100% | 21.55 | 1116 / 1118 |
| prostate | 100% | 1322.09 | 245 / 245 | 100% | 21.15 | 501 / 502 |
| stomach | 100% | 913.05 | 359 / 359 | 100% | 26.51 | 285 / 286 |
| lung | 99% | 1033.96 | 575 / 578 | 100% | 21.62 | 1155 / 1155 |
| kidney | 100% | 880.55 | 89 / 89 | 99% | 20.59 | 895 / 901 |
| ovary | 100% | 1244.42 | 180 / 180 | 99% | 16.47 | 427 / 430 |
| adrenal gland | 100% | 1419.30 | 258 / 258 | 99% | 24.97 | 227 / 230 |
| intestine | 100% | 1368.89 | 966 / 966 | 98% | 24.14 | 519 / 527 |
| liver | 100% | 594.83 | 226 / 226 | 98% | 12.52 | 399 / 406 |
| pancreas | 96% | 470.09 | 314 / 328 | 99% | 19.92 | 177 / 178 |
| skin | 100% | 1333.53 | 1808 / 1809 | 95% | 22.26 | 448 / 472 |
| adipose | 100% | 1500.05 | 1204 / 1204 | 0% | 0 | 0 / 0 |
| blood vessel | 100% | 1541.16 | 1335 / 1335 | 0% | 0 | 0 / 0 |
| lymph node | 0% | 0 | 0 / 0 | 100% | 24.09 | 29 / 29 |
| muscle | 100% | 2165.37 | 803 / 803 | 0% | 0 | 0 / 0 |
| spleen | 100% | 918.77 | 241 / 241 | 0% | 0 | 0 / 0 |
| tonsil | 0% | 0 | 0 / 0 | 100% | 19.25 | 45 / 45 |
| ureter | 0% | 0 | 0 / 0 | 100% | 8.68 | 1 / 1 |
| heart | 98% | 1227.82 | 840 / 861 | 0% | 0 | 0 / 0 |
| eye | 0% | 0 | 0 / 0 | 84% | 11.77 | 67 / 80 |
| peripheral blood | 60% | 580.90 | 556 / 929 | 0% | 0 | 0 / 0 |
| abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| GO_0000398 | Biological process | mRNA splicing, via spliceosome |
| GO_0008380 | Biological process | RNA splicing |
| GO_0045292 | Biological process | mRNA cis splicing, via spliceosome |
| GO_0016607 | Cellular component | nuclear speck |
| GO_0071011 | Cellular component | precatalytic spliceosome |
| GO_0005654 | Cellular component | nucleoplasm |
| GO_0071005 | Cellular component | U2-type precatalytic spliceosome |
| GO_0005634 | Cellular component | nucleus |
| GO_0070064 | Molecular function | proline-rich region binding |
| GO_0005515 | Molecular function | protein binding |
| GO_0008270 | Molecular function | zinc ion binding |
| GO_0003723 | Molecular function | RNA binding |
| Gene name | WBP4 |
| Protein name | WW domain-binding protein 4 (WBP-4) (Formin-binding protein 21) (WW domain-containing-binding protein 4) |
| Synonyms | FNBP21 FBP21 |
| Description | FUNCTION: Involved in pre-mRNA splicing as a component of the spliceosome . May play a role in cross-intron bridging of U1 and U2 snRNPs in the mammalian A complex . . |
| Accessions | O75554 ENST00000379487.5 [O75554-1] |