Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 21 studies | 39% ± 17% | |
astrocyte | 18 studies | 41% ± 20% | |
microglial cell | 14 studies | 43% ± 12% | |
glutamatergic neuron | 12 studies | 47% ± 26% | |
pericyte | 12 studies | 39% ± 18% | |
fibroblast | 12 studies | 35% ± 14% | |
macrophage | 11 studies | 37% ± 17% | |
oligodendrocyte precursor cell | 11 studies | 35% ± 15% | |
oligodendrocyte | 11 studies | 38% ± 13% | |
GABAergic neuron | 10 studies | 45% ± 25% | |
basal cell | 10 studies | 38% ± 23% | |
adipocyte | 9 studies | 46% ± 12% | |
smooth muscle cell | 9 studies | 38% ± 11% | |
type I pneumocyte | 8 studies | 39% ± 17% | |
epithelial cell | 7 studies | 41% ± 22% | |
dendritic cell | 7 studies | 28% ± 10% | |
mast cell | 7 studies | 27% ± 10% | |
ciliated cell | 7 studies | 24% ± 7% | |
neuron | 6 studies | 40% ± 15% | |
interneuron | 6 studies | 52% ± 26% | |
club cell | 6 studies | 38% ± 14% | |
T cell | 6 studies | 25% ± 6% | |
endothelial cell of lymphatic vessel | 6 studies | 38% ± 14% | |
retinal cone cell | 5 studies | 30% ± 13% | |
cardiac muscle cell | 5 studies | 57% ± 15% | |
myeloid cell | 5 studies | 30% ± 8% | |
amacrine cell | 5 studies | 28% ± 17% | |
monocyte | 5 studies | 30% ± 9% | |
type II pneumocyte | 5 studies | 35% ± 6% | |
granule cell | 4 studies | 32% ± 8% | |
retinal ganglion cell | 4 studies | 32% ± 17% | |
B cell | 4 studies | 25% ± 7% | |
mesothelial cell | 4 studies | 32% ± 7% | |
Mueller cell | 4 studies | 36% ± 20% | |
retina horizontal cell | 4 studies | 26% ± 10% | |
retinal rod cell | 4 studies | 27% ± 9% | |
respiratory goblet cell | 4 studies | 38% ± 12% | |
secretory cell | 3 studies | 27% ± 7% | |
GABAergic interneuron | 3 studies | 43% ± 5% | |
CD4-positive, alpha-beta T cell | 3 studies | 25% ± 4% | |
vein endothelial cell | 3 studies | 40% ± 22% | |
glycinergic amacrine cell | 3 studies | 30% ± 11% | |
endothelial cell of vascular tree | 3 studies | 40% ± 18% | |
hepatocyte | 3 studies | 55% ± 20% | |
retinal pigment epithelial cell | 3 studies | 48% ± 25% | |
ependymal cell | 3 studies | 43% ± 19% | |
alveolar macrophage | 3 studies | 39% ± 9% | |
capillary endothelial cell | 3 studies | 26% ± 6% | |
natural killer cell | 3 studies | 23% ± 3% | |
lymphocyte | 3 studies | 40% ± 10% | |
muscle cell | 3 studies | 48% ± 19% | |
goblet cell | 3 studies | 46% ± 34% | |
mural cell | 3 studies | 40% ± 9% | |
mucus secreting cell | 3 studies | 39% ± 10% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 8759.54 | 1445 / 1445 | 100% | 18.32 | 183 / 183 |
prostate | 100% | 8109.72 | 245 / 245 | 100% | 18.31 | 501 / 502 |
thymus | 100% | 11288.08 | 653 / 653 | 100% | 24.56 | 603 / 605 |
breast | 100% | 7824.72 | 459 / 459 | 100% | 17.58 | 1114 / 1118 |
uterus | 100% | 6849.68 | 170 / 170 | 98% | 11.85 | 452 / 459 |
brain | 99% | 5684.79 | 2610 / 2642 | 100% | 27.67 | 702 / 705 |
pancreas | 99% | 3611.95 | 326 / 328 | 98% | 11.45 | 175 / 178 |
lung | 100% | 7138.22 | 577 / 578 | 97% | 11.82 | 1126 / 1155 |
stomach | 100% | 6005.52 | 359 / 359 | 97% | 11.21 | 277 / 286 |
bladder | 100% | 6526.95 | 21 / 21 | 97% | 9.16 | 488 / 504 |
intestine | 100% | 6999.10 | 966 / 966 | 97% | 9.48 | 509 / 527 |
skin | 100% | 11938.95 | 1809 / 1809 | 96% | 10.82 | 455 / 472 |
kidney | 100% | 4983.04 | 89 / 89 | 96% | 10.89 | 865 / 901 |
adrenal gland | 99% | 4605.70 | 256 / 258 | 90% | 9.21 | 208 / 230 |
ovary | 100% | 6072.96 | 180 / 180 | 87% | 7.40 | 376 / 430 |
liver | 99% | 2801.71 | 223 / 226 | 80% | 5.07 | 326 / 406 |
adipose | 100% | 7899.07 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 9707.16 | 1335 / 1335 | 0% | 0 | 0 / 0 |
muscle | 100% | 8320.29 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 5288.96 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 16.85 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 7.86 | 1 / 1 |
heart | 97% | 7063.32 | 834 / 861 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 86% | 6.48 | 25 / 29 |
eye | 0% | 0 | 0 / 0 | 85% | 6.55 | 68 / 80 |
peripheral blood | 69% | 1757.58 | 637 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0045053 | Biological process | protein retention in Golgi apparatus |
GO_0006623 | Biological process | protein targeting to vacuole |
GO_0007005 | Biological process | mitochondrion organization |
GO_0006869 | Biological process | lipid transport |
GO_1901526 | Biological process | positive regulation of mitophagy |
GO_0070062 | Cellular component | extracellular exosome |
Gene name | VPS13D |
Protein name | Vacuolar protein sorting 13 homolog D Intermembrane lipid transfer protein VPS13D (Vacuolar protein sorting-associated protein 13D) Vacuolar protein sorting 13 homolog D (S. cerevisiae) |
Synonyms | KIAA0453 RP5-888M10.1-003 |
Description | FUNCTION: Mediates the transfer of lipids between membranes at organelle contact sites (By similarity). Functions in promoting mitochondrial clearance by mitochondrial autophagy (mitophagy), also possibly by positively regulating mitochondrial fission . Mitophagy plays an important role in regulating cell health and mitochondrial size and homeostasis. . |
Accessions | ENST00000645371.1 A0A679DQJ9 ENST00000466732.2 ENST00000620676.6 [Q5THJ4-1] ENST00000613099.4 [Q5THJ4-2] A0A679DVS7 ENST00000646917.1 ENST00000543766.2 R4GMW1 H3BLS7 Q5THJ4 A0A679DSH4 B1AJZ2 F5GX56 ENST00000011700.10 A0A2R8YD87 A0A2R8Y876 |