Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 5 studies | 24% ± 5% | |
epithelial cell | 5 studies | 32% ± 13% | |
B cell | 4 studies | 23% ± 5% | |
fibroblast | 4 studies | 23% ± 7% | |
CD4-positive, alpha-beta T cell | 3 studies | 18% ± 2% | |
hematopoietic precursor cell | 3 studies | 22% ± 9% | |
naive B cell | 3 studies | 18% ± 2% | |
pericyte | 3 studies | 22% ± 5% | |
smooth muscle cell | 3 studies | 21% ± 4% | |
plasma cell | 3 studies | 24% ± 10% | |
ciliated cell | 3 studies | 21% ± 3% | |
glutamatergic neuron | 3 studies | 24% ± 5% | |
plasmacytoid dendritic cell | 3 studies | 22% ± 4% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 100% | 1548.52 | 2642 / 2642 | 100% | 48.80 | 705 / 705 |
esophagus | 100% | 914.41 | 1445 / 1445 | 100% | 18.18 | 183 / 183 |
liver | 100% | 873.52 | 226 / 226 | 100% | 31.86 | 406 / 406 |
ovary | 100% | 1210.14 | 180 / 180 | 100% | 48.68 | 430 / 430 |
pancreas | 100% | 923.77 | 328 / 328 | 100% | 26.99 | 178 / 178 |
thymus | 100% | 1139.08 | 653 / 653 | 100% | 39.32 | 605 / 605 |
uterus | 100% | 1132.08 | 170 / 170 | 100% | 32.24 | 459 / 459 |
skin | 100% | 999.30 | 1808 / 1809 | 100% | 39.92 | 472 / 472 |
kidney | 100% | 1092.11 | 89 / 89 | 100% | 30.08 | 898 / 901 |
adrenal gland | 100% | 1471.44 | 258 / 258 | 100% | 30.07 | 229 / 230 |
prostate | 100% | 1190.49 | 245 / 245 | 99% | 40.40 | 499 / 502 |
stomach | 100% | 930.13 | 359 / 359 | 99% | 22.28 | 284 / 286 |
intestine | 100% | 1078.92 | 966 / 966 | 99% | 25.35 | 523 / 527 |
lung | 100% | 1116.57 | 578 / 578 | 99% | 25.04 | 1146 / 1155 |
bladder | 100% | 1173.05 | 21 / 21 | 99% | 29.05 | 497 / 504 |
breast | 100% | 1215.86 | 459 / 459 | 99% | 27.55 | 1102 / 1118 |
adipose | 100% | 1234.08 | 1204 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 60.95 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 52.65 | 29 / 29 |
muscle | 100% | 1147.16 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 1699.85 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 28.95 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 37.60 | 1 / 1 |
blood vessel | 100% | 989.38 | 1333 / 1335 | 0% | 0 | 0 / 0 |
heart | 100% | 947.70 | 857 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 96% | 692.12 | 895 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0061025 | Biological process | membrane fusion |
GO_0032940 | Biological process | secretion by cell |
GO_0015031 | Biological process | protein transport |
GO_0006888 | Biological process | endoplasmic reticulum to Golgi vesicle-mediated transport |
GO_0006890 | Biological process | retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum |
GO_0030163 | Biological process | protein catabolic process |
GO_0007041 | Biological process | lysosomal transport |
GO_0005764 | Cellular component | lysosome |
GO_0005783 | Cellular component | endoplasmic reticulum |
GO_0031201 | Cellular component | SNARE complex |
GO_0030137 | Cellular component | COPI-coated vesicle |
GO_0005789 | Cellular component | endoplasmic reticulum membrane |
GO_0005484 | Molecular function | SNAP receptor activity |
GO_0005515 | Molecular function | protein binding |
Gene name | USE1 |
Protein name | Vesicle transport protein USE1 (Putative MAPK-activating protein PM26) (USE1-like protein) (p31) Vesicle transport protein USE1 (USE1-like protein) Unconventional SNARE in the ER 1 |
Synonyms | USE1L MDS032 |
Description | FUNCTION: SNARE that may be involved in targeting and fusion of Golgi-derived retrograde transport vesicles with the ER. . |
Accessions | ENST00000596136.5 [Q9NZ43-2] ENST00000593597.1 M0QZZ6 ENST00000601662.5 ENST00000600970.5 ENST00000594724.5 ENST00000595101.5 [Q9NZ43-3] Q9NZ43 M0QZE0 M0QYT5 ENST00000263897.10 [Q9NZ43-1] |