Name | Number of supported studies | Average coverage | |
|---|---|---|---|
| endothelial cell | 9 studies | 27% ± 10% | |
| ciliated cell | 6 studies | 23% ± 7% | |
| macrophage | 6 studies | 25% ± 6% | |
| epithelial cell | 5 studies | 36% ± 13% | |
| fibroblast | 5 studies | 20% ± 6% | |
| oligodendrocyte precursor cell | 4 studies | 24% ± 8% | |
| myeloid cell | 4 studies | 21% ± 3% | |
| basal cell | 4 studies | 27% ± 9% | |
| abnormal cell | 4 studies | 28% ± 9% | |
| type II pneumocyte | 4 studies | 21% ± 6% | |
| astrocyte | 4 studies | 28% ± 6% | |
| goblet cell | 4 studies | 25% ± 13% | |
| classical monocyte | 3 studies | 21% ± 3% | |
| hematopoietic precursor cell | 3 studies | 20% ± 3% | |
| microglial cell | 3 studies | 25% ± 2% | |
| lymphocyte | 3 studies | 20% ± 2% | |
| GABAergic neuron | 3 studies | 41% ± 6% | |
| glutamatergic neuron | 3 studies | 52% ± 6% | |
| dendritic cell | 3 studies | 27% ± 5% | |
| endothelial cell of lymphatic vessel | 3 studies | 20% ± 5% | |
| transit amplifying cell | 3 studies | 28% ± 11% | |
| erythroblast | 3 studies | 22% ± 4% | |
| oligodendrocyte | 3 studies | 24% ± 2% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
|---|---|---|---|---|---|---|
| esophagus | 100% | 7916.53 | 1445 / 1445 | 100% | 107.27 | 183 / 183 |
| intestine | 100% | 7586.35 | 966 / 966 | 100% | 72.70 | 527 / 527 |
| ovary | 100% | 10113.21 | 180 / 180 | 100% | 125.66 | 430 / 430 |
| skin | 100% | 11065.37 | 1809 / 1809 | 100% | 121.75 | 472 / 472 |
| stomach | 100% | 5682.47 | 359 / 359 | 100% | 77.80 | 286 / 286 |
| lung | 100% | 9931.03 | 578 / 578 | 100% | 90.89 | 1154 / 1155 |
| prostate | 100% | 8256.98 | 245 / 245 | 100% | 66.84 | 501 / 502 |
| uterus | 100% | 9589.71 | 170 / 170 | 100% | 85.60 | 458 / 459 |
| thymus | 100% | 9424.19 | 653 / 653 | 100% | 68.46 | 603 / 605 |
| breast | 100% | 9141.16 | 459 / 459 | 100% | 119.42 | 1114 / 1118 |
| bladder | 100% | 8589.10 | 21 / 21 | 100% | 73.09 | 502 / 504 |
| brain | 99% | 5494.35 | 2626 / 2642 | 100% | 77.76 | 705 / 705 |
| pancreas | 100% | 3925.97 | 328 / 328 | 99% | 59.63 | 176 / 178 |
| kidney | 100% | 6292.10 | 89 / 89 | 97% | 51.52 | 878 / 901 |
| adrenal gland | 100% | 8083.80 | 258 / 258 | 96% | 52.40 | 220 / 230 |
| liver | 100% | 3666.35 | 226 / 226 | 93% | 46.83 | 377 / 406 |
| adipose | 100% | 9040.40 | 1204 / 1204 | 0% | 0 | 0 / 0 |
| blood vessel | 100% | 8144.43 | 1335 / 1335 | 0% | 0 | 0 / 0 |
| eye | 0% | 0 | 0 / 0 | 100% | 73.97 | 80 / 80 |
| lymph node | 0% | 0 | 0 / 0 | 100% | 74.28 | 29 / 29 |
| muscle | 100% | 7234.91 | 803 / 803 | 0% | 0 | 0 / 0 |
| spleen | 100% | 7746.24 | 241 / 241 | 0% | 0 | 0 / 0 |
| tonsil | 0% | 0 | 0 / 0 | 100% | 77.07 | 45 / 45 |
| ureter | 0% | 0 | 0 / 0 | 100% | 25.78 | 1 / 1 |
| heart | 98% | 5751.14 | 847 / 861 | 0% | 0 | 0 / 0 |
| peripheral blood | 97% | 6564.04 | 903 / 929 | 0% | 0 | 0 / 0 |
| abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| GO_0007339 | Biological process | binding of sperm to zona pellucida |
| GO_0062029 | Biological process | positive regulation of stress granule assembly |
| GO_0034063 | Biological process | stress granule assembly |
| GO_0061484 | Biological process | hematopoietic stem cell homeostasis |
| GO_0031519 | Cellular component | PcG protein complex |
| GO_0005694 | Cellular component | chromosome |
| GO_0010494 | Cellular component | cytoplasmic stress granule |
| GO_0005737 | Cellular component | cytoplasm |
| GO_0005634 | Cellular component | nucleus |
| GO_0005515 | Molecular function | protein binding |
| GO_0003723 | Molecular function | RNA binding |
| Gene name | UBAP2L |
| Protein name | Ubiquitin associated protein 2 like Ubiquitin-associated protein 2-like (Protein NICE-4) (RNA polymerase II degradation factor UBAP2L) |
| Synonyms | KIAA0144 NICE4 |
| Description | FUNCTION: Recruits the ubiquitination machinery to RNA polymerase II for polyubiquitination, removal and degradation, when the transcription-coupled nucleotide excision repair (TC-NER) machinery fails to resolve DNA damage . Plays an important role in the activity of long-term repopulating hematopoietic stem cells (LT-HSCs) (By similarity). Required for efficient formation of stress granules . . |
| Accessions | Q5VU81 ENST00000412596.5 Q5VU78 ENST00000437652.6 ENST00000707139.1 H7C2T8 Q5VU77 Q5VU79 ENST00000343815.10 [Q14157-1] Q14157 ENST00000368504.6 ENST00000361546.6 [Q14157-2] F8W726 ENST00000613315.4 [Q14157-4] ENST00000456325.5 ENST00000433615.5 ENST00000441890.5 ENST00000428931.6 [Q14157-2] ENST00000271877.11 A0AA34QVE6 ENST00000428595.1 H0Y5H6 Q5VU80 |