Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 14 studies | 28% ± 10% | |
astrocyte | 10 studies | 36% ± 14% | |
oligodendrocyte precursor cell | 9 studies | 26% ± 11% | |
type I pneumocyte | 8 studies | 29% ± 12% | |
epithelial cell | 8 studies | 36% ± 19% | |
glutamatergic neuron | 7 studies | 41% ± 24% | |
GABAergic neuron | 7 studies | 37% ± 18% | |
oligodendrocyte | 7 studies | 25% ± 7% | |
fibroblast | 7 studies | 21% ± 5% | |
interneuron | 6 studies | 33% ± 20% | |
macrophage | 6 studies | 24% ± 6% | |
adipocyte | 6 studies | 26% ± 5% | |
endothelial cell of lymphatic vessel | 6 studies | 36% ± 13% | |
type II pneumocyte | 6 studies | 21% ± 6% | |
neuron | 5 studies | 36% ± 16% | |
club cell | 5 studies | 24% ± 6% | |
basal cell | 5 studies | 30% ± 18% | |
microglial cell | 4 studies | 25% ± 5% | |
myeloid cell | 4 studies | 21% ± 5% | |
cardiac muscle cell | 4 studies | 21% ± 1% | |
ciliated cell | 4 studies | 27% ± 11% | |
lymphocyte | 4 studies | 22% ± 4% | |
smooth muscle cell | 4 studies | 20% ± 4% | |
hematopoietic precursor cell | 3 studies | 27% ± 9% | |
glial cell | 3 studies | 19% ± 1% | |
granule cell | 3 studies | 17% ± 2% | |
neural progenitor cell | 3 studies | 19% ± 3% | |
ependymal cell | 3 studies | 26% ± 13% | |
respiratory goblet cell | 3 studies | 22% ± 3% | |
alveolar macrophage | 3 studies | 21% ± 5% | |
pericyte | 3 studies | 22% ± 7% | |
goblet cell | 3 studies | 39% ± 23% | |
transit amplifying cell | 3 studies | 41% ± 26% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 2872.16 | 1445 / 1445 | 100% | 30.21 | 183 / 183 |
intestine | 100% | 2421.27 | 966 / 966 | 100% | 22.28 | 527 / 527 |
ovary | 100% | 2778.91 | 180 / 180 | 100% | 19.31 | 430 / 430 |
prostate | 100% | 2725.93 | 245 / 245 | 100% | 15.92 | 502 / 502 |
stomach | 100% | 2012.52 | 359 / 359 | 100% | 24.76 | 286 / 286 |
breast | 100% | 2588.19 | 459 / 459 | 100% | 19.96 | 1117 / 1118 |
skin | 100% | 3716.16 | 1809 / 1809 | 100% | 18.34 | 471 / 472 |
uterus | 100% | 2621.09 | 170 / 170 | 100% | 15.56 | 457 / 459 |
bladder | 100% | 2334.90 | 21 / 21 | 99% | 16.21 | 501 / 504 |
lung | 100% | 2553.71 | 578 / 578 | 99% | 18.32 | 1148 / 1155 |
thymus | 100% | 3294.00 | 653 / 653 | 99% | 12.30 | 600 / 605 |
pancreas | 100% | 1519.49 | 327 / 328 | 99% | 12.03 | 176 / 178 |
brain | 99% | 1561.44 | 2603 / 2642 | 99% | 13.23 | 698 / 705 |
kidney | 100% | 2042.03 | 89 / 89 | 97% | 10.26 | 878 / 901 |
adrenal gland | 100% | 4486.43 | 258 / 258 | 96% | 9.40 | 221 / 230 |
liver | 100% | 991.30 | 225 / 226 | 82% | 6.47 | 332 / 406 |
adipose | 100% | 2279.68 | 1204 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 23.12 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 16.37 | 29 / 29 |
muscle | 100% | 3946.67 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 1950.85 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 18.48 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 6.95 | 1 / 1 |
blood vessel | 100% | 1844.54 | 1334 / 1335 | 0% | 0 | 0 / 0 |
heart | 96% | 1563.37 | 825 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 60% | 1606.83 | 562 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0010468 | Biological process | regulation of gene expression |
GO_0000932 | Cellular component | P-body |
GO_0005694 | Cellular component | chromosome |
GO_0005737 | Cellular component | cytoplasm |
GO_0005634 | Cellular component | nucleus |
GO_0045296 | Molecular function | cadherin binding |
GO_0005515 | Molecular function | protein binding |
GO_0003723 | Molecular function | RNA binding |
Gene name | UBAP2 |
Protein name | Ubiquitin-associated protein 2 (UBAP-2) (RNA polymerase II degradation factor UBAP2) Ubiquitin associated protein 2 |
Synonyms | KIAA1491 |
Description | FUNCTION: Recruits the ubiquitination machinery to RNA polymerase II for polyubiquitination, removal and degradation, when the transcription-coupled nucleotide excision repair (TC-NER) machinery fails to resolve DNA damage . May promote the degradation of ANXA2 . . |
Accessions | A0A804HIK1 ENST00000684754.1 ENST00000683252.1 A0A0D9SFI5 A0A804HLD2 ENST00000629575.2 A0A804HIV8 ENST00000682914.1 Q5T6F2 ENST00000421278.2 ENST00000682239.1 [Q5T6F2-1] ENST00000379239.9 ENST00000360802.6 Q5JV08 A0A8C8KGQ8 A0A804HLJ4 ENST00000683140.1 H0YDN2 A0A8C8MQ70 A2A305 ENST00000412543.6 ENST00000681980.1 A0A804HJY7 ENST00000379238.7 [Q5T6F2-1] ENST00000684158.1 [Q5T6F2-1] ENST00000488443.1 ENST00000683659.1 ENST00000682209.1 ENST00000683717.1 |