Name | Number of supported studies | Average coverage | |
---|---|---|---|
mast cell | 8 studies | 25% ± 7% | |
epithelial cell | 6 studies | 23% ± 7% | |
GABAergic neuron | 6 studies | 44% ± 20% | |
endothelial cell | 5 studies | 23% ± 3% | |
glutamatergic neuron | 5 studies | 50% ± 24% | |
ciliated cell | 4 studies | 22% ± 8% | |
oligodendrocyte precursor cell | 4 studies | 24% ± 8% | |
alveolar macrophage | 4 studies | 26% ± 10% | |
GABAergic interneuron | 3 studies | 24% ± 4% | |
CD16-negative, CD56-bright natural killer cell, human | 3 studies | 24% ± 8% | |
CD4-positive, alpha-beta T cell | 3 studies | 18% ± 4% | |
Mueller cell | 3 studies | 27% ± 5% | |
club cell | 3 studies | 19% ± 1% | |
natural killer cell | 3 studies | 20% ± 2% | |
type II pneumocyte | 3 studies | 19% ± 2% | |
lymphocyte | 3 studies | 29% ± 8% | |
astrocyte | 3 studies | 36% ± 11% | |
interneuron | 3 studies | 50% ± 10% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 5 studies | 37% ± 19% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 1814.03 | 1445 / 1445 | 99% | 12.29 | 182 / 183 |
intestine | 100% | 2079.70 | 966 / 966 | 98% | 9.50 | 518 / 527 |
stomach | 100% | 1300.88 | 359 / 359 | 97% | 9.04 | 278 / 286 |
lung | 100% | 2290.10 | 577 / 578 | 97% | 8.55 | 1124 / 1155 |
kidney | 100% | 2137.48 | 89 / 89 | 97% | 7.90 | 875 / 901 |
thymus | 100% | 1164.44 | 652 / 653 | 97% | 10.12 | 585 / 605 |
breast | 98% | 1182.12 | 450 / 459 | 94% | 7.45 | 1047 / 1118 |
uterus | 100% | 1871.21 | 170 / 170 | 91% | 7.88 | 417 / 459 |
pancreas | 89% | 649.79 | 293 / 328 | 97% | 7.19 | 173 / 178 |
bladder | 100% | 1175.29 | 21 / 21 | 83% | 5.60 | 420 / 504 |
ovary | 100% | 1562.50 | 180 / 180 | 81% | 3.93 | 350 / 430 |
prostate | 99% | 1220.62 | 243 / 245 | 77% | 2.83 | 388 / 502 |
adrenal gland | 100% | 1117.71 | 258 / 258 | 75% | 3.15 | 172 / 230 |
brain | 91% | 1397.48 | 2413 / 2642 | 65% | 2.43 | 456 / 705 |
liver | 98% | 928.67 | 221 / 226 | 40% | 1.37 | 162 / 406 |
skin | 100% | 3638.76 | 1809 / 1809 | 32% | 1.20 | 153 / 472 |
spleen | 100% | 1621.71 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 8.23 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 5.74 | 1 / 1 |
blood vessel | 100% | 2338.94 | 1334 / 1335 | 0% | 0 | 0 / 0 |
adipose | 98% | 984.68 | 1185 / 1204 | 0% | 0 | 0 / 0 |
muscle | 59% | 422.95 | 477 / 803 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 55% | 2.12 | 16 / 29 |
heart | 49% | 289.49 | 426 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 29% | 200.73 | 271 / 929 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 4% | 0.10 | 3 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0090181 | Biological process | regulation of cholesterol metabolic process |
GO_0010874 | Biological process | regulation of cholesterol efflux |
GO_0006629 | Biological process | lipid metabolic process |
GO_0010887 | Biological process | negative regulation of cholesterol storage |
GO_0042632 | Biological process | cholesterol homeostasis |
GO_0005515 | Molecular function | protein binding |
Gene name | TTC39B |
Protein name | Tetratricopeptide repeat protein 39B Tetratricopeptide repeat protein 39B (TPR repeat protein 39B) Tetratricopeptide repeat domain 39B |
Synonyms | C9orf52 hCG_1741198 |
Description | FUNCTION: Regulates high density lipoprotein (HDL) cholesterol metabolism by promoting the ubiquitination and degradation of the oxysterols receptors LXR (NR1H2 and NR1H3). . |
Accessions | H0YAJ6 ENST00000297615.10 A0A8V8NCV2 ENST00000507993.5 [Q5VTQ0-5] Q5VTQ0 A0A8V8PNE1 ENST00000512701.7 A0A8V8N5K5 ENST00000507285.5 [Q5VTQ0-5] ENST00000380850.9 ENST00000506891.1 |