Name | Number of supported studies | Average coverage | |
---|---|---|---|
ciliated cell | 16 studies | 51% ± 13% | |
epithelial cell | 12 studies | 41% ± 17% | |
basal cell | 8 studies | 43% ± 27% | |
club cell | 7 studies | 24% ± 9% | |
fibroblast | 6 studies | 34% ± 26% | |
progenitor cell | 5 studies | 30% ± 13% | |
secretory cell | 4 studies | 36% ± 24% | |
kidney loop of Henle epithelial cell | 4 studies | 25% ± 10% | |
connective tissue cell | 4 studies | 34% ± 15% | |
kidney distal convoluted tubule epithelial cell | 4 studies | 39% ± 8% | |
endothelial cell | 4 studies | 26% ± 9% | |
respiratory goblet cell | 3 studies | 32% ± 13% | |
squamous epithelial cell | 3 studies | 56% ± 10% | |
pericyte | 3 studies | 45% ± 34% | |
intestinal crypt stem cell | 3 studies | 27% ± 2% | |
luminal hormone-sensing cell of mammary gland | 3 studies | 24% ± 1% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
ovary | 100% | 6527.53 | 180 / 180 | 100% | 53.63 | 429 / 430 |
liver | 100% | 3253.84 | 226 / 226 | 99% | 66.64 | 402 / 406 |
prostate | 100% | 2102.86 | 245 / 245 | 99% | 50.45 | 497 / 502 |
bladder | 100% | 2420.33 | 21 / 21 | 98% | 96.60 | 496 / 504 |
uterus | 100% | 2809.71 | 170 / 170 | 98% | 52.64 | 450 / 459 |
kidney | 100% | 2291.90 | 89 / 89 | 97% | 38.33 | 875 / 901 |
thymus | 100% | 1917.75 | 651 / 653 | 97% | 44.64 | 585 / 605 |
intestine | 99% | 2807.35 | 957 / 966 | 96% | 92.48 | 508 / 527 |
pancreas | 99% | 1172.90 | 326 / 328 | 96% | 37.21 | 171 / 178 |
lung | 98% | 1326.85 | 565 / 578 | 97% | 47.48 | 1124 / 1155 |
breast | 100% | 3820.40 | 459 / 459 | 93% | 39.98 | 1038 / 1118 |
stomach | 99% | 1222.00 | 357 / 359 | 91% | 77.35 | 260 / 286 |
esophagus | 93% | 2048.54 | 1351 / 1445 | 96% | 31.29 | 175 / 183 |
skin | 98% | 1208.72 | 1770 / 1809 | 90% | 29.00 | 425 / 472 |
brain | 76% | 775.49 | 1995 / 2642 | 98% | 55.27 | 691 / 705 |
adrenal gland | 100% | 1919.06 | 258 / 258 | 40% | 9.09 | 92 / 230 |
adipose | 100% | 3243.86 | 1204 / 1204 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 102.51 | 1 / 1 |
tonsil | 0% | 0 | 0 / 0 | 98% | 40.69 | 44 / 45 |
spleen | 95% | 956.63 | 229 / 241 | 0% | 0 | 0 / 0 |
blood vessel | 93% | 834.32 | 1239 / 1335 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 88% | 20.70 | 70 / 80 |
heart | 62% | 453.20 | 536 / 861 | 0% | 0 | 0 / 0 |
muscle | 19% | 111.97 | 151 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 1.60 | 1 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0039532 | Biological process | negative regulation of cytoplasmic pattern recognition receptor signaling pathway |
GO_0043123 | Biological process | positive regulation of canonical NF-kappaB signal transduction |
GO_0043124 | Biological process | negative regulation of canonical NF-kappaB signal transduction |
GO_0070062 | Cellular component | extracellular exosome |
GO_0005886 | Cellular component | plasma membrane |
GO_0005515 | Molecular function | protein binding |
Gene name | TSPAN6 |
Protein name | Tetraspanin 6 Tetraspanin-6 (Tspan-6) (A15 homolog) (Putative NF-kappa-B-activating protein 321) (T245 protein) (Tetraspanin TM4-D) (Transmembrane 4 superfamily member 6) |
Synonyms | UNQ767/PRO1560 TM4SF6 |
Description | |
Accessions | A0A087WYV6 ENST00000612152.4 O43657 ENST00000373020.9 |