Name | Number of supported studies | Average coverage | |
---|---|---|---|
fibroblast | 10 studies | 25% ± 8% | |
pericyte | 10 studies | 23% ± 7% | |
smooth muscle cell | 10 studies | 22% ± 7% | |
conventional dendritic cell | 9 studies | 24% ± 11% | |
macrophage | 9 studies | 22% ± 5% | |
basal cell | 8 studies | 28% ± 15% | |
classical monocyte | 8 studies | 28% ± 7% | |
connective tissue cell | 8 studies | 23% ± 6% | |
ciliated cell | 8 studies | 30% ± 10% | |
myofibroblast cell | 6 studies | 24% ± 6% | |
epithelial cell | 6 studies | 39% ± 19% | |
non-classical monocyte | 5 studies | 26% ± 10% | |
monocyte | 5 studies | 19% ± 3% | |
abnormal cell | 5 studies | 22% ± 4% | |
goblet cell | 5 studies | 29% ± 13% | |
plasmacytoid dendritic cell | 5 studies | 27% ± 4% | |
neutrophil | 4 studies | 20% ± 2% | |
endothelial cell | 4 studies | 30% ± 8% | |
pancreatic A cell | 3 studies | 33% ± 10% | |
neural crest cell | 3 studies | 17% ± 1% | |
plasma cell | 3 studies | 20% ± 5% | |
club cell | 3 studies | 17% ± 0% | |
type II pneumocyte | 3 studies | 27% ± 10% | |
dendritic cell | 3 studies | 38% ± 13% | |
enteroendocrine cell | 3 studies | 30% ± 13% | |
intestinal crypt stem cell | 3 studies | 21% ± 2% | |
luminal hormone-sensing cell of mammary gland | 3 studies | 18% ± 3% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 2240.10 | 1445 / 1445 | 100% | 35.77 | 183 / 183 |
liver | 100% | 1425.58 | 226 / 226 | 100% | 32.39 | 406 / 406 |
ovary | 100% | 2907.81 | 180 / 180 | 100% | 51.34 | 430 / 430 |
pancreas | 100% | 1557.38 | 328 / 328 | 100% | 44.59 | 178 / 178 |
stomach | 100% | 1755.13 | 359 / 359 | 100% | 42.82 | 286 / 286 |
uterus | 100% | 2290.52 | 170 / 170 | 100% | 75.88 | 459 / 459 |
skin | 100% | 2479.15 | 1808 / 1809 | 100% | 53.18 | 472 / 472 |
thymus | 100% | 2216.96 | 653 / 653 | 100% | 58.97 | 604 / 605 |
kidney | 100% | 2249.63 | 89 / 89 | 100% | 38.12 | 897 / 901 |
prostate | 100% | 2460.87 | 245 / 245 | 99% | 67.73 | 499 / 502 |
breast | 100% | 1991.40 | 459 / 459 | 99% | 63.96 | 1110 / 1118 |
intestine | 100% | 2122.92 | 966 / 966 | 99% | 49.31 | 523 / 527 |
lung | 100% | 2128.77 | 577 / 578 | 99% | 50.85 | 1148 / 1155 |
bladder | 100% | 2432.52 | 21 / 21 | 99% | 64.11 | 499 / 504 |
brain | 99% | 1129.49 | 2615 / 2642 | 100% | 42.58 | 705 / 705 |
adrenal gland | 100% | 4149.04 | 258 / 258 | 99% | 43.87 | 227 / 230 |
adipose | 100% | 1837.91 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 2339.97 | 1335 / 1335 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 38.63 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 32.58 | 29 / 29 |
peripheral blood | 100% | 6348.88 | 929 / 929 | 0% | 0 | 0 / 0 |
spleen | 100% | 2818.00 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 63.71 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 39.45 | 1 / 1 |
muscle | 98% | 1027.76 | 789 / 803 | 0% | 0 | 0 / 0 |
heart | 97% | 1089.21 | 836 / 861 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0000379 | Biological process | tRNA-type intron splice site recognition and cleavage |
GO_0006397 | Biological process | mRNA processing |
GO_0000214 | Cellular component | tRNA-intron endonuclease complex |
GO_0005730 | Cellular component | nucleolus |
GO_0005654 | Cellular component | nucleoplasm |
GO_0016829 | Molecular function | lyase activity |
GO_0000213 | Molecular function | tRNA-intron endonuclease activity |
GO_0003676 | Molecular function | nucleic acid binding |
Gene name | TSEN34 |
Protein name | tRNA-splicing endonuclease subunit Sen34 (EC 4.6.1.16) tRNA-intron lyase (EC 4.6.1.16) tRNA-splicing endonuclease subunit Sen34 tRNA-splicing endonuclease subunit Sen34 (EC 4.6.1.16) (Leukocyte receptor cluster member 5) (tRNA-intron endonuclease Sen34) (HsSen34) |
Synonyms | LENG5 SEN34 |
Description | FUNCTION: Constitutes one of the two catalytic subunit of the tRNA-splicing endonuclease complex, a complex responsible for identification and cleavage of the splice sites in pre-tRNA. It cleaves pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3'-cyclic phosphate and 5'-OH termini. There are no conserved sequences at the splice sites, but the intron is invariably located at the same site in the gene, placing the splice sites an invariant distance from the constant structural features of the tRNA body. It probably carries the active site for 3'-splice site cleavage. The tRNA splicing endonuclease is also involved in mRNA processing via its association with pre-mRNA 3'-end processing factors, establishing a link between pre-tRNA splicing and pre-mRNA 3'-end formation, suggesting that the endonuclease subunits function in multiple RNA-processing events. . FUNCTION: Constitutes one of the two catalytic subunit of the tRNA-splicing endonuclease complex, a complex responsible for identification and cleavage of the splice sites in pre-tRNA. It cleaves pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3'-cyclic phosphate and 5'-OH termini. There are no conserved sequences at the splice sites, but the intron is invariably located at the same site in the gene, placing the splice sites an invariant distance from the constant structural features of the tRNA body. . FUNCTION: Constitutes one of the two catalytic subunit of the tRNA-splicing endonuclease complex, a complex responsible for identification and cleavage of the splice sites in pre-tRNA. It cleaves pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3'-cyclic phosphate and 5'-OH termini. There are no conserved sequences at the splice sites, but the intron is invariably located at the same site in the gene, placing the splice sites an invariant distance from the constant structural features of the tRNA body. . FUNCTION: Constitutes one of the two catalytic subunit of the tRNA-splicing endonuclease complex, a complex responsible for identification and cleavage of the splice sites in pre-tRNA. It cleaves pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3'-cyclic phosphate and 5'-OH termini. There are no conserved sequences at the splice sites, but the intron is invariably located at the same site in the gene, placing the splice sites an invariant distance from the constant structural features of the tRNA body. . |
Accessions | ENST00000615482.4 ENST00000621740.4 ENST00000612236.4 ENST00000617902.4 ENST00000653273.2 ENST00000396388.3 ENST00000611798.4 ENST00000611560.4 ENST00000616063.4 ENST00000667261.1 ENST00000613337.4 ENST00000615000.4 ENST00000617149.1 ENST00000612393.4 ENST00000616209.1 ENST00000429671 ENST00000617559.4 ENST00000617739.4 ENST00000613712.4 ENST00000618447.1 ENST00000619263.4 ENST00000614984.1 ENST00000302937.8 ENST00000622524.4 ENST00000615811.4 ENST00000613310.4 A0A590UJ73 ENST00000429671.7 Q9BSV6 ENST00000613653.4 ENST00000615975.4 B0V3J0 ENST00000396383.5 A0A0G2JNL0 ENST00000619994.1 ENST00000622538.1 E7EQB3 ENST00000618135.4 ENST00000617543.1 ENST00000455798.6 ENST00000615079.1 ENST00000614734.4 ENST00000619273.4 ENST00000665674.2 ENST00000455798 ENST00000614948.4 A0A590UJW4 ENST00000614483.4 A0A0G2JNK5 ENST00000622076.4 ENST00000613888.4 ENST00000615900.1 |