Name | Number of supported studies | Average coverage | |
---|---|---|---|
astrocyte | 13 studies | 38% ± 16% | |
glutamatergic neuron | 12 studies | 45% ± 25% | |
oligodendrocyte precursor cell | 12 studies | 37% ± 19% | |
oligodendrocyte | 11 studies | 38% ± 12% | |
GABAergic neuron | 10 studies | 47% ± 26% | |
endothelial cell | 10 studies | 32% ± 12% | |
fibroblast | 8 studies | 31% ± 13% | |
interneuron | 6 studies | 53% ± 27% | |
pericyte | 6 studies | 22% ± 6% | |
cardiac muscle cell | 5 studies | 30% ± 7% | |
neuron | 4 studies | 36% ± 11% | |
granule cell | 4 studies | 29% ± 6% | |
retina horizontal cell | 4 studies | 28% ± 9% | |
retinal cone cell | 4 studies | 35% ± 13% | |
retinal rod cell | 4 studies | 30% ± 12% | |
smooth muscle cell | 4 studies | 29% ± 7% | |
GABAergic interneuron | 3 studies | 39% ± 6% | |
microglial cell | 3 studies | 21% ± 3% | |
mesothelial cell | 3 studies | 32% ± 12% | |
amacrine cell | 3 studies | 28% ± 10% | |
retinal ganglion cell | 3 studies | 32% ± 18% | |
adipocyte | 3 studies | 20% ± 4% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 100% | 1420.39 | 2633 / 2642 | 100% | 12.67 | 703 / 705 |
thymus | 100% | 1172.31 | 650 / 653 | 94% | 6.75 | 566 / 605 |
kidney | 96% | 634.08 | 85 / 89 | 94% | 9.02 | 850 / 901 |
adrenal gland | 89% | 467.43 | 229 / 258 | 92% | 11.10 | 211 / 230 |
prostate | 100% | 1289.89 | 244 / 245 | 75% | 3.44 | 376 / 502 |
breast | 100% | 1104.43 | 458 / 459 | 70% | 3.31 | 787 / 1118 |
lung | 98% | 752.48 | 568 / 578 | 67% | 3.42 | 779 / 1155 |
ovary | 100% | 2796.03 | 180 / 180 | 65% | 2.80 | 279 / 430 |
uterus | 99% | 2537.72 | 169 / 170 | 55% | 3.39 | 254 / 459 |
skin | 94% | 795.43 | 1705 / 1809 | 60% | 3.36 | 285 / 472 |
bladder | 100% | 1362.38 | 21 / 21 | 47% | 2.26 | 238 / 504 |
esophagus | 85% | 1316.72 | 1227 / 1445 | 55% | 2.98 | 100 / 183 |
intestine | 93% | 1186.94 | 896 / 966 | 24% | 1.03 | 124 / 527 |
pancreas | 24% | 81.76 | 80 / 328 | 87% | 5.31 | 155 / 178 |
blood vessel | 100% | 1952.20 | 1335 / 1335 | 0% | 0 | 0 / 0 |
adipose | 100% | 1124.81 | 1201 / 1204 | 0% | 0 | 0 / 0 |
heart | 98% | 1184.54 | 843 / 861 | 0% | 0 | 0 / 0 |
spleen | 98% | 559.71 | 235 / 241 | 0% | 0 | 0 / 0 |
stomach | 60% | 569.57 | 217 / 359 | 33% | 1.40 | 95 / 286 |
lymph node | 0% | 0 | 0 / 0 | 38% | 1.42 | 11 / 29 |
eye | 0% | 0 | 0 / 0 | 25% | 0.78 | 20 / 80 |
liver | 1% | 3.53 | 3 / 226 | 22% | 0.90 | 89 / 406 |
tonsil | 0% | 0 | 0 / 0 | 22% | 0.87 | 10 / 45 |
muscle | 14% | 48.16 | 110 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 4% | 16.26 | 38 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0051281 | Biological process | positive regulation of release of sequestered calcium ion into cytosol |
GO_0051480 | Biological process | regulation of cytosolic calcium ion concentration |
GO_0051592 | Biological process | response to calcium ion |
GO_1903779 | Biological process | regulation of cardiac conduction |
GO_0006816 | Biological process | calcium ion transport |
GO_0070588 | Biological process | calcium ion transmembrane transport |
GO_0042438 | Biological process | melanin biosynthetic process |
GO_0034703 | Cellular component | cation channel complex |
GO_0043235 | Cellular component | receptor complex |
GO_0005886 | Cellular component | plasma membrane |
GO_0070679 | Molecular function | inositol 1,4,5 trisphosphate binding |
GO_0051117 | Molecular function | ATPase binding |
GO_0015279 | Molecular function | store-operated calcium channel activity |
GO_0005262 | Molecular function | calcium channel activity |
GO_0005102 | Molecular function | signaling receptor binding |
GO_0005515 | Molecular function | protein binding |
GO_0005261 | Molecular function | monoatomic cation channel activity |
Gene name | TRPC1 |
Protein name | Transient receptor potential cation channel subfamily C member 1 Short transient receptor potential channel 1 Short transient receptor potential channel 1 (TrpC1) (Transient receptor protein 1) (TRP-1) |
Synonyms | TRP1 |
Description | FUNCTION: Thought to form a receptor-activated non-selective calcium permeant cation channel. Probably is operated by a phosphatidylinositol second messenger system activated by receptor tyrosine kinases or G-protein coupled receptors. Seems to be also activated by intracellular calcium store depletion. . FUNCTION: Thought to form a receptor-activated non-selective calcium permeant cation channel. Probably is operated by a phosphatidylinositol second messenger system activated by receptor tyrosine kinases or G-protein coupled receptors. Seems to be also activated by intracellular calcium store depletion. . FUNCTION: Thought to form a receptor-activated non-selective calcium permeant cation channel. Probably is operated by a phosphatidylinositol second messenger system activated by receptor tyrosine kinases or G-protein coupled receptors. Seems to be also activated by intracellular calcium store depletion. . |
Accessions | P48995 A0A8V8TLK5 ENST00000460401.1 ENST00000476941.6 [P48995-1] A7VJS2 ENST00000698238.1 ENST00000273482.10 [P48995-2] H7C508 |