Name | Number of supported studies | Average coverage | |
---|---|---|---|
glutamatergic neuron | 10 studies | 45% ± 24% | |
astrocyte | 8 studies | 30% ± 14% | |
endothelial cell | 7 studies | 27% ± 9% | |
retinal cone cell | 7 studies | 24% ± 5% | |
retinal ganglion cell | 6 studies | 56% ± 24% | |
GABAergic neuron | 6 studies | 50% ± 23% | |
neuron | 5 studies | 24% ± 6% | |
retina horizontal cell | 5 studies | 21% ± 7% | |
retinal rod cell | 4 studies | 19% ± 3% | |
oligodendrocyte precursor cell | 4 studies | 29% ± 8% | |
interneuron | 4 studies | 56% ± 24% | |
oligodendrocyte | 4 studies | 27% ± 11% | |
GABAergic interneuron | 3 studies | 26% ± 6% | |
microglial cell | 3 studies | 20% ± 1% | |
epithelial cell | 3 studies | 27% ± 6% | |
ciliated cell | 3 studies | 26% ± 5% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 1482.50 | 1444 / 1445 | 100% | 23.85 | 183 / 183 |
brain | 100% | 5004.87 | 2635 / 2642 | 100% | 50.31 | 705 / 705 |
breast | 100% | 1373.46 | 459 / 459 | 99% | 36.39 | 1111 / 1118 |
ovary | 100% | 1203.24 | 180 / 180 | 99% | 17.37 | 426 / 430 |
prostate | 100% | 1498.99 | 244 / 245 | 99% | 24.76 | 498 / 502 |
lung | 99% | 1332.24 | 574 / 578 | 99% | 21.62 | 1149 / 1155 |
uterus | 100% | 1647.84 | 170 / 170 | 98% | 21.58 | 450 / 459 |
thymus | 100% | 1714.84 | 653 / 653 | 98% | 16.91 | 593 / 605 |
intestine | 100% | 1548.23 | 965 / 966 | 97% | 16.16 | 511 / 527 |
bladder | 100% | 1629.81 | 21 / 21 | 97% | 18.73 | 488 / 504 |
stomach | 97% | 1048.25 | 350 / 359 | 98% | 16.99 | 280 / 286 |
adrenal gland | 100% | 1546.09 | 258 / 258 | 93% | 18.96 | 213 / 230 |
skin | 99% | 1305.89 | 1790 / 1809 | 93% | 20.85 | 441 / 472 |
kidney | 99% | 1022.33 | 88 / 89 | 92% | 12.78 | 827 / 901 |
pancreas | 79% | 518.14 | 259 / 328 | 97% | 13.91 | 172 / 178 |
liver | 92% | 668.90 | 209 / 226 | 75% | 8.68 | 305 / 406 |
spleen | 100% | 1221.83 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 19.67 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 6.28 | 1 / 1 |
adipose | 100% | 1364.96 | 1202 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 1714.07 | 1332 / 1335 | 0% | 0 | 0 / 0 |
muscle | 99% | 1205.60 | 797 / 803 | 0% | 0 | 0 / 0 |
heart | 91% | 1039.10 | 787 / 861 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 90% | 12.17 | 26 / 29 |
eye | 0% | 0 | 0 / 0 | 66% | 6.94 | 53 / 80 |
peripheral blood | 38% | 492.60 | 353 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0045814 | Biological process | negative regulation of gene expression, epigenetic |
GO_0016558 | Biological process | protein import into peroxisome matrix |
GO_0051091 | Biological process | positive regulation of DNA-binding transcription factor activity |
GO_0051865 | Biological process | protein autoubiquitination |
GO_0000122 | Biological process | negative regulation of transcription by RNA polymerase II |
GO_0032088 | Biological process | negative regulation of NF-kappaB transcription factor activity |
GO_0051092 | Biological process | positive regulation of NF-kappaB transcription factor activity |
GO_0045893 | Biological process | positive regulation of DNA-templated transcription |
GO_0046600 | Biological process | negative regulation of centriole replication |
GO_0050821 | Biological process | protein stabilization |
GO_0070842 | Biological process | aggresome assembly |
GO_0006513 | Biological process | protein monoubiquitination |
GO_0005778 | Cellular component | peroxisomal membrane |
GO_0048471 | Cellular component | perinuclear region of cytoplasm |
GO_0005777 | Cellular component | peroxisome |
GO_0035098 | Cellular component | ESC/E(Z) complex |
GO_0005829 | Cellular component | cytosol |
GO_0005737 | Cellular component | cytoplasm |
GO_0005694 | Cellular component | chromosome |
GO_0016235 | Cellular component | aggresome |
GO_0061630 | Molecular function | ubiquitin protein ligase activity |
GO_0042803 | Molecular function | protein homodimerization activity |
GO_0003682 | Molecular function | chromatin binding |
GO_0031625 | Molecular function | ubiquitin protein ligase binding |
GO_0008270 | Molecular function | zinc ion binding |
GO_0005164 | Molecular function | tumor necrosis factor receptor binding |
GO_0004842 | Molecular function | ubiquitin-protein transferase activity |
GO_0003713 | Molecular function | transcription coactivator activity |
GO_0005515 | Molecular function | protein binding |
GO_0140862 | Molecular function | histone H2AK119 ubiquitin ligase activity |
Gene name | TRIM37 |
Protein name | E3 ubiquitin-protein ligase TRIM37 (EC 2.3.2.27) (Mulibrey nanism protein) (RING-type E3 ubiquitin transferase TRIM37) (Tripartite motif-containing protein 37) Tripartite motif containing 37 |
Synonyms | POB1 KIAA0898 MUL |
Description | FUNCTION: E3 ubiquitin-protein ligase required to prevent centriole reduplication . Probably acts by ubiquitinating positive regulators of centriole reduplication . Mediates monoubiquitination of 'Lys-119' of histone H2A (H2AK119Ub), a specific tag for epigenetic transcriptional repression: associates with some Polycomb group (PcG) multiprotein PRC2-like complex and mediates repression of target genes . Also acts as a positive regulator of peroxisome import by mediating monoubiquitination of PEX5 at 'Lys-472': monoubiquitination promotes PEX5 stabilitation by preventing its polyubiquitination and degradation by the proteasome . Has anti-HIV activity . . |
Accessions | J3KS72 J3QRK3 J3KT32 ENST00000625984.1 J3QSF6 J3QSA0 ENST00000580973.5 ENST00000262294.12 [O94972-1] ENST00000581468.1 ENST00000577554.5 ENST00000585287.5 ENST00000583945.5 J3QSH5 ENST00000393065.6 [O94972-3] ENST00000580122.5 ENST00000393066.7 [O94972-1] ENST00000584889.3 J3KT90 O94972 |