Name | Number of supported studies | Average coverage | |
---|---|---|---|
epithelial cell | 4 studies | 35% ± 8% | |
basal cell | 4 studies | 23% ± 7% | |
dendritic cell | 3 studies | 27% ± 7% | |
macrophage | 3 studies | 16% ± 1% | |
transit amplifying cell | 3 studies | 26% ± 12% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 3 studies | 28% ± 5% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 3446.08 | 1445 / 1445 | 100% | 48.69 | 183 / 183 |
intestine | 100% | 3112.49 | 966 / 966 | 100% | 59.97 | 527 / 527 |
liver | 100% | 2850.68 | 226 / 226 | 100% | 61.15 | 406 / 406 |
prostate | 100% | 3592.36 | 245 / 245 | 100% | 65.39 | 502 / 502 |
skin | 100% | 3227.61 | 1809 / 1809 | 100% | 61.01 | 472 / 472 |
uterus | 100% | 2594.51 | 170 / 170 | 100% | 72.52 | 459 / 459 |
thymus | 100% | 3492.86 | 653 / 653 | 100% | 52.14 | 604 / 605 |
breast | 100% | 2977.94 | 459 / 459 | 100% | 74.14 | 1116 / 1118 |
brain | 100% | 2155.70 | 2637 / 2642 | 100% | 46.04 | 705 / 705 |
bladder | 100% | 2917.81 | 21 / 21 | 100% | 60.31 | 503 / 504 |
ovary | 100% | 2041.54 | 180 / 180 | 100% | 51.67 | 429 / 430 |
pancreas | 100% | 1605.07 | 327 / 328 | 100% | 49.86 | 178 / 178 |
kidney | 100% | 2963.18 | 89 / 89 | 100% | 46.76 | 898 / 901 |
lung | 100% | 3115.95 | 577 / 578 | 100% | 54.08 | 1153 / 1155 |
stomach | 100% | 2465.86 | 359 / 359 | 100% | 53.00 | 285 / 286 |
adrenal gland | 100% | 2735.19 | 258 / 258 | 97% | 33.32 | 223 / 230 |
adipose | 100% | 2556.70 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 2654.44 | 1335 / 1335 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 54.59 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 85.07 | 29 / 29 |
spleen | 100% | 3683.68 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 77.96 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 43.88 | 1 / 1 |
muscle | 99% | 1273.00 | 795 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 98% | 3086.54 | 912 / 929 | 0% | 0 | 0 / 0 |
heart | 98% | 1311.78 | 844 / 861 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0016567 | Biological process | protein ubiquitination |
GO_1901224 | Biological process | positive regulation of non-canonical NF-kappaB signal transduction |
GO_0044790 | Biological process | suppression of viral release by host |
GO_0070979 | Biological process | protein K11-linked ubiquitination |
GO_0051091 | Biological process | positive regulation of DNA-binding transcription factor activity |
GO_0046597 | Biological process | negative regulation of viral entry into host cell |
GO_0043161 | Biological process | proteasome-mediated ubiquitin-dependent protein catabolic process |
GO_0045087 | Biological process | innate immune response |
GO_0005575 | Cellular component | cellular_component |
GO_0005829 | Cellular component | cytosol |
GO_0005737 | Cellular component | cytoplasm |
GO_0005634 | Cellular component | nucleus |
GO_0003677 | Molecular function | DNA binding |
GO_0061630 | Molecular function | ubiquitin protein ligase activity |
GO_0005515 | Molecular function | protein binding |
GO_0008270 | Molecular function | zinc ion binding |
GO_0046872 | Molecular function | metal ion binding |
Gene name | TRIM26 |
Protein name | Tripartite motif-containing protein 26 (Zinc finger protein 173) Tripartite motif-containing protein 26 (EC 2.3.2.27) (Acid finger protein) (AFP) (RING finger protein 95) (Zinc finger protein 173) Tripartite motif-containing protein 26 Tripartite motif-containing protein 26 (EC 2.3.2.27) (Zinc finger protein 173) |
Synonyms | ZNF173 RNF95 |
Description | FUNCTION: E3 ubiquitin-protein ligase which regulates the IFN-beta production and antiviral response downstream of various DNA-encoded pattern-recognition receptors (PRRs). Plays also a central role in determining the response to different forms of oxidative stress by controlling levels of DNA glycosylases NEIL1, NEIL3 and NTH1 that are involved in repair of damaged DNA . Promotes nuclear IRF3 ubiquitination and proteasomal degradation . Bridges together TBK1 and NEMO during the innate response to viral infection leading to the activation of TBK1. Positively regulates LPS-mediated inflammatory innate immune response by catalyzing the 'Lys-11'-linked polyubiquitination of TAB1 to enhance its activation and subsequent NF-kappa-B and MAPK signaling . In a manner independent of its catalytic activity, inhibits WWP2, a SOX2-directed E3 ubiquitin ligase, and thus protects SOX2 from polyubiquitination and proteasomal degradation . Ubiquitinates the histone acetyltransferase protein complex component PHF20 and thereby triggers its degradation in the nucleus after its recruitment by the histone demethylase KDM6B, serving as a scaffold protein . Upon induction by TGF-beta, ubiquitinates the TFIID component TAF7 for proteasomal degradation . Induces ferroptosis by ubiquitinating SLC7A11, a critical protein for lipid reactive oxygen species (ROS) scavenging (By similarity). Inhibits directly hepatitis B virus replication by mediating HBX ubiquitination and subsequent degradation . .; FUNCTION: (Microbial infection) Promotes herpes simplex virus type 2/HHV-2 infection in vaginal epithelial cells by decreasing the nuclear localization of IRF3, the primary mediator of type I interferon activation. . |
Accessions | ENST00000419171.1 ENST00000451189.1 ENST00000450392.5 ENST00000416596.5 ENST00000415789.1 ENST00000438384.5 ENST00000423901.5 ENST00000453442.1 ENST00000433314.5 Q5SPU2 ENST00000438064.1 Q12899 ENST00000450103.1 ENST00000447711.6 ENST00000412755.5 ENST00000444979.1 ENST00000431641.5 ENST00000440149.1 A2AE50 ENST00000396558.5 ENST00000327357.9 ENST00000427612.5 ENST00000429583.5 ENST00000425523.5 ENST00000415923.6 ENST00000436219.5 A2AE48 ENST00000445457.1 ENST00000428486.5 ENST00000434785.5 ENST00000445259.6 ENST00000437089.5 ENST00000455000.6 ENST00000419401.5 ENST00000433361.1 ENST00000446196.5 ENST00000453195.5 ENST00000449136.5 ENST00000438908.5 ENST00000433836.1 A0A0G2JIW2 ENST00000383607.6 ENST00000415966.1 ENST00000456770.5 ENST00000422802.5 ENST00000427535.5 ENST00000446540.5 ENST00000418026.1 ENST00000435387.5 ENST00000439094.6 ENST00000456093.5 ENST00000424124.2 ENST00000425831.5 ENST00000422349.5 ENST00000447942.5 ENST00000438785.5 ENST00000422881.1 ENST00000454678.7 ENST00000432326.5 |