Name | Number of supported studies | Average coverage | |
---|---|---|---|
ciliated cell | 17 studies | 40% ± 18% | |
classical monocyte | 8 studies | 26% ± 12% | |
non-classical monocyte | 5 studies | 29% ± 6% | |
natural killer cell | 4 studies | 20% ± 4% | |
CD16-negative, CD56-bright natural killer cell, human | 4 studies | 20% ± 3% | |
plasma cell | 4 studies | 29% ± 11% | |
epithelial cell | 4 studies | 31% ± 11% | |
plasmacytoid dendritic cell | 4 studies | 25% ± 7% | |
conventional dendritic cell | 3 studies | 36% ± 15% | |
hematopoietic precursor cell | 3 studies | 21% ± 2% | |
myeloid cell | 3 studies | 25% ± 9% | |
macrophage | 3 studies | 19% ± 3% | |
retinal cone cell | 3 studies | 44% ± 1% | |
retinal rod cell | 3 studies | 26% ± 4% | |
endothelial cell | 3 studies | 21% ± 7% | |
dendritic cell | 3 studies | 25% ± 1% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
ovary | 100% | 343.21 | 180 / 180 | 100% | 10.25 | 430 / 430 |
brain | 100% | 489.17 | 2639 / 2642 | 100% | 12.97 | 705 / 705 |
thymus | 100% | 806.81 | 653 / 653 | 100% | 17.64 | 604 / 605 |
uterus | 100% | 557.35 | 170 / 170 | 100% | 11.81 | 458 / 459 |
breast | 100% | 418.36 | 459 / 459 | 100% | 10.30 | 1113 / 1118 |
bladder | 100% | 339.43 | 21 / 21 | 99% | 10.01 | 500 / 504 |
pancreas | 99% | 282.96 | 325 / 328 | 100% | 8.01 | 178 / 178 |
lung | 99% | 485.68 | 574 / 578 | 99% | 8.34 | 1148 / 1155 |
stomach | 99% | 274.16 | 356 / 359 | 99% | 5.71 | 284 / 286 |
skin | 99% | 477.95 | 1797 / 1809 | 99% | 10.95 | 467 / 472 |
intestine | 100% | 373.73 | 966 / 966 | 98% | 6.29 | 517 / 527 |
prostate | 100% | 355.97 | 245 / 245 | 98% | 5.49 | 491 / 502 |
kidney | 100% | 582.17 | 89 / 89 | 97% | 12.03 | 875 / 901 |
adrenal gland | 100% | 524.77 | 258 / 258 | 97% | 9.85 | 222 / 230 |
esophagus | 100% | 362.56 | 1444 / 1445 | 96% | 6.07 | 176 / 183 |
liver | 58% | 77.46 | 130 / 226 | 54% | 2.40 | 221 / 406 |
adipose | 100% | 373.73 | 1204 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 11.13 | 29 / 29 |
spleen | 100% | 610.03 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 10.01 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 8.10 | 1 / 1 |
blood vessel | 99% | 380.97 | 1326 / 1335 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 96% | 5.81 | 77 / 80 |
heart | 96% | 221.98 | 823 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 94% | 391.83 | 874 / 929 | 0% | 0 | 0 / 0 |
muscle | 8% | 9.85 | 66 / 803 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0021532 | Biological process | neural tube patterning |
GO_1905515 | Biological process | non-motile cilium assembly |
GO_0060271 | Biological process | cilium assembly |
GO_0042733 | Biological process | embryonic digit morphogenesis |
GO_0097094 | Biological process | craniofacial suture morphogenesis |
GO_0010468 | Biological process | regulation of gene expression |
GO_0060021 | Biological process | roof of mouth development |
GO_1904491 | Biological process | protein localization to ciliary transition zone |
GO_0003127 | Biological process | detection of nodal flow |
GO_0036038 | Cellular component | MKS complex |
GO_0035869 | Cellular component | ciliary transition zone |
GO_0016020 | Cellular component | membrane |
GO_0005515 | Molecular function | protein binding |
GO_0003674 | Molecular function | molecular_function |
Gene name | TMEM107 |
Protein name | Transmembrane protein 107 |
Synonyms | DC20 UNQ638/PRO1268 |
Description | FUNCTION: Plays a role in cilia formation and embryonic patterning. Requires for normal Sonic hedgehog (Shh) signaling in the neural tube and acts in combination with GLI2 and GLI3 to pattern ventral and intermediate neuronal cell types (By similarity). During ciliogenesis regulates the ciliary transition zone localization of some MKS complex proteins . . |
Accessions | ENST00000449985.6 ENST00000533070.5 [Q6UX40-3] B2RDT5 ENST00000316425.9 [Q6UX40-4] ENST00000532998.5 B3KNL7 ENST00000437139.7 [Q6UX40-1] Q6UX40 ENST00000431792.2 E9PIH0 |