Name | Number of supported studies | Average coverage | |
---|---|---|---|
astrocyte | 16 studies | 38% ± 16% | |
microglial cell | 14 studies | 47% ± 15% | |
glutamatergic neuron | 12 studies | 51% ± 25% | |
oligodendrocyte precursor cell | 12 studies | 39% ± 15% | |
oligodendrocyte | 11 studies | 30% ± 13% | |
adipocyte | 11 studies | 64% ± 20% | |
GABAergic neuron | 10 studies | 42% ± 24% | |
fibroblast | 10 studies | 28% ± 9% | |
endothelial cell | 8 studies | 29% ± 15% | |
epithelial cell | 7 studies | 36% ± 20% | |
neuron | 6 studies | 32% ± 12% | |
interneuron | 6 studies | 47% ± 21% | |
macrophage | 5 studies | 28% ± 16% | |
cardiac muscle cell | 5 studies | 39% ± 9% | |
smooth muscle cell | 5 studies | 24% ± 6% | |
granule cell | 4 studies | 27% ± 4% | |
retinal ganglion cell | 4 studies | 23% ± 5% | |
retina horizontal cell | 4 studies | 30% ± 15% | |
retinal cone cell | 4 studies | 37% ± 25% | |
retinal rod cell | 4 studies | 34% ± 16% | |
GABAergic interneuron | 3 studies | 39% ± 0% | |
amacrine cell | 3 studies | 25% ± 4% | |
GABAergic amacrine cell | 3 studies | 32% ± 11% | |
glycinergic amacrine cell | 3 studies | 23% ± 5% | |
connective tissue cell | 3 studies | 21% ± 5% | |
ependymal cell | 3 studies | 63% ± 15% | |
transit amplifying cell | 3 studies | 35% ± 20% | |
pericyte | 3 studies | 20% ± 4% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 99% | 4995.49 | 2615 / 2642 | 99% | 16.09 | 699 / 705 |
breast | 99% | 5459.66 | 455 / 459 | 95% | 7.90 | 1065 / 1118 |
kidney | 100% | 4846.07 | 89 / 89 | 94% | 14.06 | 844 / 901 |
intestine | 98% | 2672.63 | 944 / 966 | 95% | 8.82 | 501 / 527 |
thymus | 100% | 3870.59 | 650 / 653 | 93% | 7.16 | 560 / 605 |
stomach | 95% | 2170.35 | 340 / 359 | 94% | 8.23 | 268 / 286 |
ovary | 99% | 1601.84 | 178 / 180 | 84% | 4.78 | 360 / 430 |
skin | 87% | 2491.88 | 1577 / 1809 | 93% | 6.97 | 440 / 472 |
prostate | 90% | 1226.73 | 221 / 245 | 86% | 4.43 | 433 / 502 |
bladder | 100% | 2153.95 | 21 / 21 | 66% | 3.48 | 334 / 504 |
uterus | 99% | 2107.82 | 168 / 170 | 63% | 3.99 | 289 / 459 |
esophagus | 70% | 1162.51 | 1007 / 1445 | 86% | 7.90 | 158 / 183 |
lung | 80% | 1228.05 | 464 / 578 | 68% | 3.88 | 784 / 1155 |
adrenal gland | 74% | 956.10 | 192 / 258 | 73% | 10.73 | 167 / 230 |
pancreas | 50% | 473.94 | 164 / 328 | 92% | 4.98 | 163 / 178 |
liver | 62% | 948.91 | 139 / 226 | 50% | 2.29 | 201 / 406 |
adipose | 100% | 7250.46 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 3927.10 | 1331 / 1335 | 0% | 0 | 0 / 0 |
muscle | 99% | 3115.12 | 797 / 803 | 0% | 0 | 0 / 0 |
heart | 97% | 3012.02 | 837 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 91% | 6.37 | 73 / 80 |
spleen | 39% | 414.60 | 95 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 38% | 1.18 | 17 / 45 |
lymph node | 0% | 0 | 0 / 0 | 7% | 0.44 | 2 / 29 |
peripheral blood | 1% | 6.38 | 7 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0007043 | Biological process | cell-cell junction assembly |
GO_0007155 | Biological process | cell adhesion |
GO_0098609 | Biological process | cell-cell adhesion |
GO_0099140 | Biological process | presynaptic actin cytoskeleton organization |
GO_0001726 | Cellular component | ruffle |
GO_0015629 | Cellular component | actin cytoskeleton |
GO_0045202 | Cellular component | synapse |
GO_0005886 | Cellular component | plasma membrane |
GO_0005737 | Cellular component | cytoplasm |
GO_0005925 | Cellular component | focal adhesion |
GO_0003779 | Molecular function | actin binding |
GO_0005200 | Molecular function | structural constituent of cytoskeleton |
GO_0051015 | Molecular function | actin filament binding |
GO_0005515 | Molecular function | protein binding |
GO_0005198 | Molecular function | structural molecule activity |
GO_0005178 | Molecular function | integrin binding |
Gene name | TLN2 |
Protein name | Talin 2 Talin-2 |
Synonyms | KIAA0320 |
Description | FUNCTION: As a major component of focal adhesion plaques that links integrin to the actin cytoskeleton, may play an important role in cell adhesion. Recruits PIP5K1C to focal adhesion plaques and strongly activates its kinase activity (By similarity). . |
Accessions | ENST00000636159.2 ENST00000494733.5 G1UI21 Q9Y4G6 H0YMT1 ENST00000561311.5 A0A1B0GVU7 ENST00000472902.1 H0YN01 ENST00000636159 |