Name | Number of supported studies | Average coverage | |
---|---|---|---|
oligodendrocyte precursor cell | 7 studies | 38% ± 14% | |
pericyte | 6 studies | 27% ± 6% | |
astrocyte | 5 studies | 33% ± 10% | |
retinal cone cell | 3 studies | 19% ± 2% | |
GABAergic neuron | 3 studies | 27% ± 8% | |
glutamatergic neuron | 3 studies | 28% ± 9% | |
oligodendrocyte | 3 studies | 20% ± 2% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 4 studies | 24% ± 3% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 78% | 1511.90 | 2056 / 2642 | 98% | 25.37 | 690 / 705 |
breast | 80% | 4591.10 | 369 / 459 | 76% | 32.27 | 855 / 1118 |
pancreas | 63% | 978.89 | 208 / 328 | 88% | 45.44 | 156 / 178 |
prostate | 38% | 710.60 | 93 / 245 | 91% | 35.94 | 457 / 502 |
muscle | 99% | 7856.31 | 794 / 803 | 0% | 0 | 0 / 0 |
intestine | 65% | 5439.48 | 629 / 966 | 27% | 8.78 | 141 / 527 |
esophagus | 62% | 3061.29 | 899 / 1445 | 28% | 7.82 | 52 / 183 |
adipose | 87% | 4599.40 | 1045 / 1204 | 0% | 0 | 0 / 0 |
thymus | 36% | 624.55 | 236 / 653 | 49% | 13.00 | 298 / 605 |
stomach | 36% | 1244.02 | 131 / 359 | 40% | 23.49 | 114 / 286 |
heart | 71% | 6246.35 | 609 / 861 | 0% | 0 | 0 / 0 |
uterus | 39% | 1332.01 | 66 / 170 | 24% | 22.15 | 109 / 459 |
ovary | 29% | 431.28 | 53 / 180 | 29% | 4.24 | 125 / 430 |
tonsil | 0% | 0 | 0 / 0 | 44% | 10.91 | 20 / 45 |
skin | 7% | 92.58 | 122 / 1809 | 33% | 17.75 | 155 / 472 |
blood vessel | 39% | 845.64 | 515 / 1335 | 0% | 0 | 0 / 0 |
liver | 0% | 0 | 0 / 226 | 34% | 6.06 | 140 / 406 |
adrenal gland | 1% | 12.59 | 3 / 258 | 27% | 4.44 | 61 / 230 |
lung | 2% | 22.81 | 10 / 578 | 23% | 9.70 | 261 / 1155 |
bladder | 5% | 42.71 | 1 / 21 | 18% | 3.28 | 90 / 504 |
kidney | 0% | 0 | 0 / 89 | 13% | 2.76 | 116 / 901 |
lymph node | 0% | 0 | 0 / 0 | 7% | 0.71 | 2 / 29 |
eye | 0% | 0 | 0 / 0 | 1% | 0.08 | 1 / 80 |
peripheral blood | 0% | 1.94 | 2 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spleen | 0% | 0 | 0 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0006986 | Biological process | response to unfolded protein |
GO_0051781 | Biological process | positive regulation of cell division |
GO_0034976 | Biological process | response to endoplasmic reticulum stress |
GO_0007165 | Biological process | signal transduction |
GO_0016525 | Biological process | negative regulation of angiogenesis |
GO_0048771 | Biological process | tissue remodeling |
GO_0071603 | Biological process | endothelial cell-cell adhesion |
GO_0050731 | Biological process | positive regulation of peptidyl-tyrosine phosphorylation |
GO_0001938 | Biological process | positive regulation of endothelial cell proliferation |
GO_0034103 | Biological process | regulation of tissue remodeling |
GO_0090023 | Biological process | positive regulation of neutrophil chemotaxis |
GO_0048266 | Biological process | behavioral response to pain |
GO_0051451 | Biological process | myoblast migration |
GO_0005615 | Cellular component | extracellular space |
GO_0005576 | Cellular component | extracellular region |
GO_0070062 | Cellular component | extracellular exosome |
GO_0062023 | Cellular component | collagen-containing extracellular matrix |
GO_0005783 | Cellular component | endoplasmic reticulum |
GO_0016529 | Cellular component | sarcoplasmic reticulum |
GO_0005604 | Cellular component | basement membrane |
GO_0008201 | Molecular function | heparin binding |
GO_0008083 | Molecular function | growth factor activity |
GO_0005178 | Molecular function | integrin binding |
GO_0005509 | Molecular function | calcium ion binding |
GO_0005515 | Molecular function | protein binding |
Gene name | THBS4 |
Protein name | Thrombospondin-4 Thrombospondin 4 |
Synonyms | TSP4 |
Description | FUNCTION: Adhesive glycoprotein that mediates cell-to-cell and cell-to-matrix interactions and is involved in various processes including cellular proliferation, migration, adhesion and attachment, inflammatory response to CNS injury, regulation of vascular inflammation and adaptive responses of the heart to pressure overload and in myocardial function and remodeling. Binds to structural extracellular matrix (ECM) proteins and modulates the ECM in response to tissue damage, contributing to cardioprotective and adaptive ECM remodeling. Plays a role in ER stress response, via its interaction with the activating transcription factor 6 alpha (ATF6) which produces adaptive ER stress response factors and protects myocardium from pressure overload. May contribute to spinal presynaptic hypersensitivity and neuropathic pain states after peripheral nerve injury. May play a role in regulating protective astrogenesis from the subventricular zone (SVZ) niche after injury in a NOTCH1-dependent manner (By similarity). . |
Accessions | P35443 ENST00000511733.1 E7ES19 ENST00000350881.6 |