SYNM | OmnibusX

Name	Number of supported studies	Average coverage
smooth muscle cell	16 studies	25% ± 7%	Explore
endothelial cell of lymphatic vessel	12 studies	27% ± 11%	Explore
pericyte	12 studies	38% ± 13%	Explore
endothelial cell	6 studies	27% ± 12%	Explore
astrocyte	4 studies	25% ± 10%	Explore
Mueller cell	4 studies	25% ± 5%	Explore
glutamatergic neuron	4 studies	30% ± 6%	Explore
myoepithelial cell	4 studies	42% ± 12%	Explore
cardiac muscle cell	3 studies	20% ± 5%	Explore
GABAergic neuron	3 studies	21% ± 5%	Explore

Name	Number of supported studies	Average coverage
brain	4 studies	23% ± 4%	Explore

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
prostate	88%	32995.32	215 / 245	97%	87.65	489 / 502
esophagus	85%	91165.97	1232 / 1445	58%	32.30	107 / 183
brain	37%	3479.36	979 / 2642	97%	45.39	687 / 705
breast	65%	12613.39	298 / 459	62%	24.37	695 / 1118
bladder	90%	85053.86	19 / 21	33%	15.14	166 / 504
adrenal gland	12%	828.36	31 / 258	93%	34.97	215 / 230
intestine	77%	72785.11	739 / 966	26%	8.95	137 / 527
muscle	100%	42206.41	802 / 803	0%	0	0 / 0
skin	11%	901.20	197 / 1809	86%	43.05	404 / 472
blood vessel	96%	22449.53	1284 / 1335	0%	0	0 / 0
uterus	40%	4961.18	68 / 170	51%	13.54	233 / 459
heart	88%	18303.69	759 / 861	0%	0	0 / 0
stomach	46%	30335.83	164 / 359	40%	29.41	115 / 286
tonsil	0%	0	0 / 0	71%	8.12	32 / 45
lung	34%	2678.87	199 / 578	36%	17.00	412 / 1155
kidney	1%	84.98	1 / 89	67%	11.70	601 / 901
eye	0%	0	0 / 0	46%	6.80	37 / 80
thymus	3%	266.51	22 / 653	43%	5.26	258 / 605
pancreas	0%	0	0 / 328	32%	18.67	57 / 178
adipose	31%	3262.53	369 / 1204	0%	0	0 / 0
liver	0%	0	0 / 226	27%	3.15	110 / 406
ovary	12%	1238.39	22 / 180	3%	0.54	15 / 430
lymph node	0%	0	0 / 0	3%	0.33	1 / 29
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
peripheral blood	0%	0	0 / 929	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
spleen	0%	0	0 / 241	0%	0	0 / 0
ureter	0%	0	0 / 0	0%	0	0 / 1

GO_0031443	Biological process	fast-twitch skeletal muscle fiber contraction
GO_0045104	Biological process	intermediate filament cytoskeleton organization
GO_0045111	Cellular component	intermediate filament cytoskeleton
GO_0042383	Cellular component	sarcolemma
GO_0060053	Cellular component	neurofilament cytoskeleton
GO_0005912	Cellular component	adherens junction
GO_0043034	Cellular component	costamere
GO_0005882	Cellular component	intermediate filament
GO_0017166	Molecular function	vinculin binding
GO_0005200	Molecular function	structural constituent of cytoskeleton
GO_0019215	Molecular function	intermediate filament binding
GO_0005515	Molecular function	protein binding
GO_0008307	Molecular function	structural constituent of muscle

Gene name	SYNM
Protein name	Synemin Desmuslin, isoform CRA_a (Synemin) Synemin (Desmuslin)
Synonyms	SYN DMN hCG_28262 KIAA0353
Description	FUNCTION: Type-VI intermediate filament (IF) which plays an important cytoskeletal role within the muscle cell cytoskeleton. It forms heteromeric IFs with desmin and/or vimentin, and via its interaction with cytoskeletal proteins alpha-dystrobrevin, dystrophin, talin-1, utrophin and vinculin, is able to link these heteromeric IFs to adherens-type junctions, such as to the costameres, neuromuscular junctions, and myotendinous junctions within striated muscle cells. .
Accessions	A0A075B7B1 ENST00000594047.2 [O15061-2] ENST00000594047 ENST00000560674.5 H0YL34 C9JIE4 ENST00000328642.11 [O15061-3] O15061 ENST00000336292.11 [O15061-1] ENST00000328642

SYNM report