Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 11 studies | 23% ± 6% | |
B cell | 10 studies | 20% ± 5% | |
fibroblast | 9 studies | 21% ± 6% | |
plasma cell | 7 studies | 26% ± 9% | |
naive B cell | 7 studies | 22% ± 4% | |
macrophage | 6 studies | 20% ± 4% | |
epithelial cell | 5 studies | 35% ± 14% | |
CD16-negative, CD56-bright natural killer cell, human | 4 studies | 20% ± 2% | |
natural killer cell | 4 studies | 19% ± 4% | |
memory B cell | 4 studies | 19% ± 3% | |
pericyte | 4 studies | 19% ± 3% | |
astrocyte | 4 studies | 21% ± 2% | |
basal cell | 4 studies | 23% ± 9% | |
goblet cell | 4 studies | 35% ± 17% | |
plasmacytoid dendritic cell | 4 studies | 22% ± 8% | |
classical monocyte | 3 studies | 26% ± 5% | |
conventional dendritic cell | 3 studies | 26% ± 9% | |
hematopoietic precursor cell | 3 studies | 19% ± 5% | |
non-classical monocyte | 3 studies | 25% ± 3% | |
GABAergic neuron | 3 studies | 28% ± 7% | |
glutamatergic neuron | 3 studies | 36% ± 9% | |
abnormal cell | 3 studies | 18% ± 4% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
breast | 100% | 2950.85 | 459 / 459 | 100% | 70.98 | 1118 / 1118 |
esophagus | 100% | 2232.01 | 1445 / 1445 | 100% | 45.29 | 183 / 183 |
liver | 100% | 2093.40 | 226 / 226 | 100% | 47.12 | 406 / 406 |
lung | 100% | 2722.73 | 578 / 578 | 100% | 55.11 | 1155 / 1155 |
ovary | 100% | 3267.83 | 180 / 180 | 100% | 66.02 | 430 / 430 |
pancreas | 100% | 2193.61 | 328 / 328 | 100% | 54.97 | 178 / 178 |
prostate | 100% | 3644.66 | 245 / 245 | 100% | 94.59 | 502 / 502 |
stomach | 100% | 2189.28 | 359 / 359 | 100% | 45.22 | 286 / 286 |
thymus | 100% | 3293.86 | 653 / 653 | 100% | 72.03 | 605 / 605 |
uterus | 100% | 3015.42 | 170 / 170 | 100% | 63.57 | 459 / 459 |
kidney | 100% | 2430.63 | 89 / 89 | 100% | 44.73 | 900 / 901 |
brain | 100% | 1786.44 | 2635 / 2642 | 100% | 61.21 | 705 / 705 |
intestine | 100% | 2223.88 | 966 / 966 | 100% | 47.61 | 525 / 527 |
skin | 100% | 2938.60 | 1809 / 1809 | 100% | 49.78 | 470 / 472 |
bladder | 100% | 2355.05 | 21 / 21 | 99% | 53.99 | 501 / 504 |
adrenal gland | 100% | 2358.39 | 258 / 258 | 97% | 38.25 | 222 / 230 |
adipose | 100% | 2732.67 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 2310.23 | 1335 / 1335 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 60.22 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 67.41 | 29 / 29 |
peripheral blood | 100% | 3298.83 | 929 / 929 | 0% | 0 | 0 / 0 |
spleen | 100% | 2793.84 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 64.67 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 22.56 | 1 / 1 |
muscle | 99% | 1323.68 | 797 / 803 | 0% | 0 | 0 / 0 |
heart | 99% | 1378.90 | 854 / 861 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0048280 | Biological process | vesicle fusion with Golgi apparatus |
GO_0090166 | Biological process | Golgi disassembly |
GO_0034498 | Biological process | early endosome to Golgi transport |
GO_0006886 | Biological process | intracellular protein transport |
GO_1903358 | Biological process | regulation of Golgi organization |
GO_0042147 | Biological process | retrograde transport, endosome to Golgi |
GO_0045732 | Biological process | positive regulation of protein catabolic process |
GO_0048278 | Biological process | vesicle docking |
GO_0006888 | Biological process | endoplasmic reticulum to Golgi vesicle-mediated transport |
GO_0006906 | Biological process | vesicle fusion |
GO_0012505 | Cellular component | endomembrane system |
GO_0005789 | Cellular component | endoplasmic reticulum membrane |
GO_0005794 | Cellular component | Golgi apparatus |
GO_0033116 | Cellular component | endoplasmic reticulum-Golgi intermediate compartment membrane |
GO_0000139 | Cellular component | Golgi membrane |
GO_0005829 | Cellular component | cytosol |
GO_0012507 | Cellular component | ER to Golgi transport vesicle membrane |
GO_0031982 | Cellular component | vesicle |
GO_0031201 | Cellular component | SNARE complex |
GO_0045296 | Molecular function | cadherin binding |
GO_0000149 | Molecular function | SNARE binding |
GO_0005484 | Molecular function | SNAP receptor activity |
GO_0005515 | Molecular function | protein binding |
Gene name | STX5 |
Protein name | Syntaxin 5 Syntaxin-5 |
Synonyms | STX5A |
Description | FUNCTION: Mediates endoplasmic reticulum to Golgi transport. Together with p115/USO1 and GM130/GOLGA2, involved in vesicle tethering and fusion at the cis-Golgi membrane to maintain the stacked and inter-connected structure of the Golgi apparatus. .; FUNCTION: [Isoform 2]: Required for Golgi to endoplasmic reticulum retrogade transport, and for intra-Golgi transport. .; FUNCTION: (Microbial infection) Required for the efficient production of infectious virion during human cytomegalovirus infection. Mechanistically, participates in the formation of the cytoplasmic viral assembly compartment where tegument acquisition and envelopment occur. . |
Accessions | Q13190 E9PNU4 ENST00000486437.1 E9PP18 E9PRW9 ENST00000431400.2 ENST00000492066.5 ENST00000491231.5 H7C3X5 ENST00000377897.8 [Q13190-4] ENST00000294179.8 [Q13190-1] ENST00000394690.5 [Q13190-2] |