Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 9 studies | 25% ± 8% | |
microglial cell | 8 studies | 25% ± 7% | |
macrophage | 7 studies | 32% ± 13% | |
astrocyte | 7 studies | 30% ± 15% | |
adipocyte | 6 studies | 24% ± 6% | |
fibroblast | 6 studies | 22% ± 7% | |
endothelial cell of lymphatic vessel | 5 studies | 24% ± 6% | |
plasma cell | 4 studies | 27% ± 5% | |
myeloid cell | 4 studies | 24% ± 7% | |
glutamatergic neuron | 4 studies | 36% ± 12% | |
oligodendrocyte precursor cell | 4 studies | 25% ± 4% | |
monocyte | 4 studies | 23% ± 5% | |
oligodendrocyte | 4 studies | 28% ± 10% | |
epithelial cell | 3 studies | 25% ± 8% | |
dendritic cell | 3 studies | 16% ± 1% | |
pericyte | 3 studies | 26% ± 9% | |
hepatocyte | 3 studies | 33% ± 12% | |
GABAergic neuron | 3 studies | 42% ± 4% | |
alveolar macrophage | 3 studies | 26% ± 8% | |
natural killer cell | 3 studies | 17% ± 2% | |
type II pneumocyte | 3 studies | 22% ± 5% | |
lymphocyte | 3 studies | 24% ± 7% | |
goblet cell | 3 studies | 26% ± 14% | |
smooth muscle cell | 3 studies | 16% ± 1% | |
neuron | 3 studies | 36% ± 16% | |
mast cell | 3 studies | 18% ± 2% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
lung | 100% | 765.80 | 578 / 578 | 100% | 12.48 | 1155 / 1155 |
breast | 100% | 928.98 | 459 / 459 | 100% | 17.90 | 1115 / 1118 |
prostate | 100% | 721.68 | 245 / 245 | 100% | 15.68 | 500 / 502 |
esophagus | 100% | 578.92 | 1442 / 1445 | 99% | 11.09 | 182 / 183 |
thymus | 100% | 899.13 | 653 / 653 | 99% | 13.55 | 600 / 605 |
pancreas | 100% | 686.05 | 328 / 328 | 99% | 10.30 | 176 / 178 |
uterus | 100% | 868.52 | 170 / 170 | 98% | 11.50 | 452 / 459 |
stomach | 100% | 649.87 | 359 / 359 | 98% | 10.88 | 281 / 286 |
intestine | 100% | 667.48 | 966 / 966 | 98% | 11.42 | 515 / 527 |
bladder | 100% | 715.19 | 21 / 21 | 97% | 10.22 | 489 / 504 |
skin | 100% | 857.52 | 1806 / 1809 | 97% | 14.56 | 458 / 472 |
brain | 96% | 288.75 | 2535 / 2642 | 100% | 13.46 | 703 / 705 |
ovary | 100% | 671.74 | 180 / 180 | 95% | 8.14 | 409 / 430 |
kidney | 100% | 549.75 | 89 / 89 | 95% | 11.51 | 855 / 901 |
liver | 100% | 442.97 | 225 / 226 | 89% | 6.55 | 360 / 406 |
adrenal gland | 100% | 703.33 | 257 / 258 | 87% | 6.44 | 200 / 230 |
adipose | 100% | 887.13 | 1204 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 10.59 | 29 / 29 |
spleen | 100% | 981.17 | 241 / 241 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 716.92 | 1333 / 1335 | 0% | 0 | 0 / 0 |
muscle | 98% | 332.45 | 784 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 98% | 928.31 | 907 / 929 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 96% | 9.74 | 43 / 45 |
heart | 95% | 438.73 | 819 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 89% | 8.37 | 71 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0006139 | Biological process | nucleobase-containing compound metabolic process |
GO_0006412 | Biological process | translation |
GO_0003729 | Molecular function | mRNA binding |
GO_0003735 | Molecular function | structural constituent of ribosome |
Gene name | SRBD1 |
Protein name | S1 RNA-binding domain-containing protein 1 |
Synonyms | |
Description | |
Accessions | ENST00000263736.5 [Q8N5C6-1] Q8N5C6 |