Name | Number of supported studies | Average coverage | |
---|---|---|---|
natural killer cell | 6 studies | 22% ± 3% | |
CD8-positive, alpha-beta memory T cell | 5 studies | 20% ± 4% | |
classical monocyte | 4 studies | 21% ± 4% | |
CD16-positive, CD56-dim natural killer cell, human | 4 studies | 22% ± 4% | |
conventional dendritic cell | 4 studies | 18% ± 3% | |
epithelial cell | 4 studies | 34% ± 18% | |
T cell | 3 studies | 33% ± 15% | |
leukocyte | 3 studies | 20% ± 2% | |
non-classical monocyte | 3 studies | 20% ± 4% | |
CD16-negative, CD56-bright natural killer cell, human | 3 studies | 20% ± 3% | |
mucosal invariant T cell | 3 studies | 22% ± 4% | |
fibroblast | 3 studies | 18% ± 2% | |
endothelial cell | 3 studies | 18% ± 2% | |
CD8-positive, alpha-beta T cell | 3 studies | 18% ± 1% | |
innate lymphoid cell | 3 studies | 21% ± 1% | |
glutamatergic neuron | 3 studies | 25% ± 7% | |
gamma-delta T cell | 3 studies | 25% ± 7% | |
regulatory T cell | 3 studies | 17% ± 1% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
peripheral blood | 4 studies | 20% ± 1% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 1291.97 | 1445 / 1445 | 100% | 23.73 | 183 / 183 |
breast | 100% | 1261.13 | 459 / 459 | 100% | 31.28 | 1117 / 1118 |
prostate | 100% | 1183.93 | 245 / 245 | 100% | 24.36 | 500 / 502 |
lung | 100% | 1162.61 | 576 / 578 | 100% | 21.03 | 1154 / 1155 |
stomach | 100% | 1054.12 | 359 / 359 | 99% | 19.67 | 283 / 286 |
pancreas | 100% | 884.70 | 328 / 328 | 99% | 18.65 | 176 / 178 |
intestine | 100% | 1155.88 | 966 / 966 | 99% | 18.16 | 521 / 527 |
uterus | 100% | 1226.28 | 170 / 170 | 99% | 16.42 | 453 / 459 |
thymus | 100% | 1185.85 | 653 / 653 | 99% | 16.84 | 596 / 605 |
ovary | 100% | 1627.19 | 180 / 180 | 98% | 13.13 | 420 / 430 |
bladder | 100% | 1134.48 | 21 / 21 | 97% | 15.19 | 491 / 504 |
kidney | 100% | 952.53 | 89 / 89 | 97% | 17.54 | 871 / 901 |
brain | 97% | 605.27 | 2574 / 2642 | 99% | 9.68 | 696 / 705 |
skin | 100% | 1857.11 | 1809 / 1809 | 93% | 14.55 | 438 / 472 |
liver | 100% | 761.89 | 226 / 226 | 92% | 9.49 | 373 / 406 |
adrenal gland | 100% | 1424.74 | 258 / 258 | 86% | 8.92 | 198 / 230 |
adipose | 100% | 1401.35 | 1204 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 12.76 | 29 / 29 |
muscle | 100% | 1165.14 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 1203.28 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 18.76 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 5.20 | 1 / 1 |
blood vessel | 100% | 1136.26 | 1334 / 1335 | 0% | 0 | 0 / 0 |
heart | 98% | 692.34 | 840 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 93% | 1321.27 | 867 / 929 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 63% | 4.86 | 50 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0006355 | Biological process | regulation of DNA-templated transcription |
GO_0031507 | Biological process | heterochromatin formation |
GO_0006334 | Biological process | nucleosome assembly |
GO_0006360 | Biological process | transcription by RNA polymerase I |
GO_0005730 | Cellular component | nucleolus |
GO_0005654 | Cellular component | nucleoplasm |
GO_0003677 | Molecular function | DNA binding |
GO_0042393 | Molecular function | histone binding |
GO_0140713 | Molecular function | histone chaperone activity |
GO_0001042 | Molecular function | RNA polymerase I core binding |
Gene name | SPTY2D1 |
Protein name | Protein SPT2 homolog (Protein KU002155) (SPT2 domain-containing protein 1) |
Synonyms | |
Description | FUNCTION: Histone chaperone that stabilizes pre-existing histone tetramers and regulates replication-independent histone exchange on chromatin . Required for normal chromatin refolding in the coding region of transcribed genes, and for the suppression of spurious transcription . Binds DNA and histones and promotes nucleosome assembly (in vitro) . Facilitates formation of tetrameric histone complexes containing histone H3 and H4 . Modulates RNA polymerase 1-mediated transcription (By similarity). Binds DNA, with a preference for branched DNA species, such as Y-form DNA and Holliday junction DNA . . |
Accessions | Q68D10 ENST00000336349.6 [Q68D10-1] |