Name | Number of supported studies | Average coverage | |
---|---|---|---|
ciliated cell | 17 studies | 38% ± 13% | |
astrocyte | 17 studies | 43% ± 20% | |
fibroblast | 16 studies | 33% ± 18% | |
oligodendrocyte precursor cell | 15 studies | 60% ± 20% | |
oligodendrocyte | 14 studies | 47% ± 18% | |
endothelial cell | 12 studies | 30% ± 15% | |
microglial cell | 12 studies | 36% ± 12% | |
GABAergic neuron | 7 studies | 35% ± 16% | |
macrophage | 7 studies | 29% ± 12% | |
retinal cone cell | 7 studies | 32% ± 17% | |
glutamatergic neuron | 6 studies | 38% ± 19% | |
adipocyte | 6 studies | 25% ± 9% | |
endothelial cell of lymphatic vessel | 6 studies | 22% ± 6% | |
smooth muscle cell | 6 studies | 26% ± 14% | |
pericyte | 5 studies | 21% ± 5% | |
epithelial cell | 4 studies | 26% ± 9% | |
retinal rod cell | 4 studies | 24% ± 9% | |
Mueller cell | 3 studies | 30% ± 12% | |
myeloid cell | 3 studies | 21% ± 4% | |
endothelial cell of vascular tree | 3 studies | 23% ± 9% | |
ependymal cell | 3 studies | 63% ± 10% | |
monocyte | 3 studies | 24% ± 4% | |
type I pneumocyte | 3 studies | 18% ± 2% | |
type II pneumocyte | 3 studies | 21% ± 2% | |
basal cell | 3 studies | 29% ± 13% | |
interneuron | 3 studies | 36% ± 18% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
thymus | 100% | 1493.64 | 653 / 653 | 99% | 11.85 | 599 / 605 |
breast | 100% | 1372.37 | 459 / 459 | 97% | 10.43 | 1086 / 1118 |
ovary | 100% | 1935.39 | 180 / 180 | 95% | 5.87 | 410 / 430 |
kidney | 99% | 885.29 | 88 / 89 | 95% | 8.64 | 856 / 901 |
skin | 99% | 790.85 | 1786 / 1809 | 94% | 11.32 | 443 / 472 |
pancreas | 94% | 455.56 | 307 / 328 | 97% | 6.01 | 172 / 178 |
brain | 95% | 793.91 | 2505 / 2642 | 93% | 17.89 | 654 / 705 |
adrenal gland | 100% | 1554.06 | 258 / 258 | 87% | 3.92 | 200 / 230 |
stomach | 99% | 754.88 | 355 / 359 | 86% | 4.64 | 245 / 286 |
prostate | 100% | 1274.13 | 245 / 245 | 82% | 4.51 | 411 / 502 |
lung | 99% | 1097.69 | 575 / 578 | 82% | 5.19 | 950 / 1155 |
intestine | 100% | 962.72 | 966 / 966 | 82% | 3.78 | 430 / 527 |
esophagus | 99% | 864.12 | 1432 / 1445 | 77% | 4.55 | 140 / 183 |
bladder | 100% | 1313.81 | 21 / 21 | 74% | 3.56 | 372 / 504 |
uterus | 100% | 1411.78 | 170 / 170 | 66% | 4.30 | 301 / 459 |
blood vessel | 100% | 920.29 | 1335 / 1335 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 2.65 | 1 / 1 |
adipose | 100% | 1267.93 | 1202 / 1204 | 0% | 0 | 0 / 0 |
spleen | 100% | 785.80 | 240 / 241 | 0% | 0 | 0 / 0 |
heart | 91% | 525.97 | 782 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 76% | 4.27 | 61 / 80 |
liver | 35% | 103.41 | 80 / 226 | 26% | 1.02 | 104 / 406 |
muscle | 45% | 147.58 | 359 / 803 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 42% | 1.77 | 19 / 45 |
peripheral blood | 32% | 139.91 | 294 / 929 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 3% | 0.07 | 1 / 29 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0007283 | Biological process | spermatogenesis |
GO_0030154 | Biological process | cell differentiation |
GO_0044458 | Biological process | motile cilium assembly |
GO_0120212 | Cellular component | sperm head-tail coupling apparatus |
GO_0005576 | Cellular component | extracellular region |
GO_0032027 | Molecular function | myosin light chain binding |
Gene name | SPATA6 |
Protein name | Spermatogenesis associated 6 Spermatogenesis-associated protein 6 Spermatogenesis associated 6, isoform CRA_a (Testicular tissue protein Li 178) |
Synonyms | hCG_1639865 |
Description | FUNCTION: Required for formation of the sperm connecting piece during spermiogenesis. Sperm connecting piece is essential for linking the developing flagellum to the head during late spermiogenesis. May be involved in myosin-based microfilament transport through interaction with myosin subunits. . |
Accessions | Q9NWH7 ENST00000371847.8 [Q9NWH7-1] ENST00000371841.1 ENST00000487543.2 A0A140VJV1 B1AN51 S4R3R3 ENST00000603831.5 ENST00000371843.7 [Q9NWH7-2] A8MU33 ENST00000396199.7 S4R3X9 |