Name | Number of supported studies | Average coverage | |
|---|---|---|---|
| endothelial cell | 11 studies | 26% ± 9% | |
| macrophage | 8 studies | 21% ± 4% | |
| fibroblast | 7 studies | 20% ± 4% | |
| interneuron | 6 studies | 32% ± 20% | |
| epithelial cell | 6 studies | 33% ± 14% | |
| GABAergic neuron | 6 studies | 37% ± 17% | |
| oligodendrocyte | 6 studies | 24% ± 6% | |
| pericyte | 5 studies | 19% ± 3% | |
| myeloid cell | 5 studies | 18% ± 3% | |
| astrocyte | 5 studies | 31% ± 9% | |
| epithelial cell of proximal tubule | 4 studies | 18% ± 3% | |
| microglial cell | 4 studies | 22% ± 4% | |
| neuron | 4 studies | 33% ± 10% | |
| adipocyte | 4 studies | 21% ± 3% | |
| ciliated cell | 4 studies | 27% ± 1% | |
| type I pneumocyte | 4 studies | 21% ± 3% | |
| glutamatergic neuron | 4 studies | 55% ± 14% | |
| oligodendrocyte precursor cell | 4 studies | 29% ± 8% | |
| endothelial cell of lymphatic vessel | 4 studies | 20% ± 3% | |
| goblet cell | 4 studies | 28% ± 15% | |
| dendritic cell | 3 studies | 28% ± 10% | |
| basal cell | 3 studies | 34% ± 4% | |
| hepatocyte | 3 studies | 37% ± 14% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
|---|---|---|---|---|---|---|
| breast | 100% | 1764.97 | 459 / 459 | 100% | 64.05 | 1118 / 1118 |
| esophagus | 100% | 1401.61 | 1445 / 1445 | 100% | 50.95 | 183 / 183 |
| lung | 100% | 1624.94 | 578 / 578 | 100% | 53.58 | 1155 / 1155 |
| ovary | 100% | 1529.43 | 180 / 180 | 100% | 45.98 | 430 / 430 |
| brain | 100% | 1520.33 | 2639 / 2642 | 100% | 56.03 | 705 / 705 |
| thymus | 100% | 2655.36 | 653 / 653 | 100% | 57.88 | 603 / 605 |
| bladder | 100% | 1359.57 | 21 / 21 | 100% | 47.65 | 502 / 504 |
| prostate | 100% | 1571.11 | 245 / 245 | 100% | 70.01 | 500 / 502 |
| uterus | 100% | 1438.59 | 170 / 170 | 99% | 51.18 | 456 / 459 |
| stomach | 100% | 1326.58 | 359 / 359 | 99% | 45.85 | 284 / 286 |
| kidney | 100% | 2165.26 | 89 / 89 | 99% | 52.50 | 892 / 901 |
| liver | 100% | 1732.74 | 226 / 226 | 99% | 44.45 | 401 / 406 |
| pancreas | 100% | 1077.71 | 327 / 328 | 99% | 45.58 | 176 / 178 |
| intestine | 100% | 1635.88 | 966 / 966 | 98% | 43.94 | 518 / 527 |
| adrenal gland | 100% | 2130.34 | 258 / 258 | 97% | 34.20 | 223 / 230 |
| skin | 100% | 1207.01 | 1808 / 1809 | 96% | 43.69 | 453 / 472 |
| adipose | 100% | 1787.95 | 1204 / 1204 | 0% | 0 | 0 / 0 |
| blood vessel | 100% | 1502.97 | 1335 / 1335 | 0% | 0 | 0 / 0 |
| lymph node | 0% | 0 | 0 / 0 | 100% | 37.77 | 29 / 29 |
| spleen | 100% | 1227.27 | 241 / 241 | 0% | 0 | 0 / 0 |
| tonsil | 0% | 0 | 0 / 0 | 100% | 48.15 | 45 / 45 |
| ureter | 0% | 0 | 0 / 0 | 100% | 19.72 | 1 / 1 |
| muscle | 100% | 1434.84 | 802 / 803 | 0% | 0 | 0 / 0 |
| heart | 97% | 882.01 | 834 / 861 | 0% | 0 | 0 / 0 |
| eye | 0% | 0 | 0 / 0 | 71% | 14.15 | 57 / 80 |
| peripheral blood | 62% | 1251.87 | 573 / 929 | 0% | 0 | 0 / 0 |
| abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| GO_2000786 | Biological process | positive regulation of autophagosome assembly |
| GO_0032456 | Biological process | endocytic recycling |
| GO_1903595 | Biological process | positive regulation of histamine secretion by mast cell |
| GO_0015031 | Biological process | protein transport |
| GO_0005886 | Cellular component | plasma membrane |
| GO_0016020 | Cellular component | membrane |
| GO_0005769 | Cellular component | early endosome |
| GO_0031901 | Cellular component | early endosome membrane |
| GO_0032991 | Cellular component | protein-containing complex |
| GO_0005868 | Cellular component | cytoplasmic dynein complex |
| GO_0098830 | Cellular component | presynaptic endosome |
| GO_0005737 | Cellular component | cytoplasm |
| GO_0031201 | Cellular component | SNARE complex |
| GO_0005158 | Molecular function | insulin receptor binding |
| GO_1990459 | Molecular function | transferrin receptor binding |
| GO_0005154 | Molecular function | epidermal growth factor receptor binding |
| GO_1990460 | Molecular function | leptin receptor binding |
| GO_0035091 | Molecular function | phosphatidylinositol binding |
| GO_0032266 | Molecular function | phosphatidylinositol-3-phosphate binding |
| GO_0005515 | Molecular function | protein binding |
| Gene name | SNX4 |
| Protein name | Sorting nexin-4 Sorting nexin 4 |
| Synonyms | |
| Description | FUNCTION: Involved in the regulation of endocytosis and in several stages of intracellular trafficking . Plays a role in recycling endocytosed transferrin receptor and prevent its degradation . Involved in autophagosome assembly by regulating trafficking and recycling of phospholipid scramblase ATG9A . . |
| Accessions | ENST00000471751.5 F8WDD4 F8W9T3 ENST00000465505.2 O95219 ENST00000251775.9 [O95219-1] |