Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 17 studies | 33% ± 15% | |
macrophage | 13 studies | 35% ± 19% | |
oligodendrocyte precursor cell | 12 studies | 34% ± 17% | |
microglial cell | 12 studies | 45% ± 14% | |
astrocyte | 11 studies | 35% ± 18% | |
oligodendrocyte | 11 studies | 30% ± 12% | |
glutamatergic neuron | 10 studies | 41% ± 27% | |
GABAergic neuron | 8 studies | 44% ± 23% | |
adipocyte | 8 studies | 29% ± 13% | |
fibroblast | 8 studies | 27% ± 11% | |
myeloid cell | 7 studies | 28% ± 8% | |
epithelial cell | 7 studies | 32% ± 13% | |
neuron | 6 studies | 34% ± 18% | |
interneuron | 6 studies | 45% ± 24% | |
dendritic cell | 6 studies | 27% ± 6% | |
pericyte | 6 studies | 26% ± 9% | |
B cell | 5 studies | 20% ± 5% | |
endothelial cell of lymphatic vessel | 5 studies | 36% ± 14% | |
monocyte | 5 studies | 24% ± 7% | |
smooth muscle cell | 5 studies | 21% ± 2% | |
granule cell | 4 studies | 23% ± 5% | |
cardiac muscle cell | 4 studies | 25% ± 2% | |
ciliated cell | 4 studies | 29% ± 6% | |
club cell | 4 studies | 24% ± 9% | |
type II pneumocyte | 4 studies | 27% ± 9% | |
basal cell | 4 studies | 32% ± 19% | |
classical monocyte | 3 studies | 20% ± 2% | |
GABAergic interneuron | 3 studies | 29% ± 3% | |
glial cell | 3 studies | 21% ± 5% | |
mononuclear phagocyte | 3 studies | 26% ± 11% | |
retinal rod cell | 3 studies | 23% ± 4% | |
hepatocyte | 3 studies | 30% ± 13% | |
neural progenitor cell | 3 studies | 27% ± 7% | |
ependymal cell | 3 studies | 40% ± 13% | |
alveolar macrophage | 3 studies | 32% ± 12% | |
type I pneumocyte | 3 studies | 31% ± 6% | |
lymphocyte | 3 studies | 26% ± 10% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 2723.09 | 1445 / 1445 | 100% | 13.74 | 183 / 183 |
lung | 100% | 2997.81 | 578 / 578 | 100% | 10.85 | 1153 / 1155 |
brain | 100% | 2212.67 | 2638 / 2642 | 100% | 13.89 | 704 / 705 |
prostate | 100% | 2953.19 | 245 / 245 | 100% | 10.87 | 500 / 502 |
breast | 100% | 3217.08 | 459 / 459 | 99% | 11.46 | 1110 / 1118 |
pancreas | 100% | 1723.77 | 328 / 328 | 99% | 7.79 | 176 / 178 |
thymus | 100% | 3591.99 | 653 / 653 | 99% | 11.66 | 598 / 605 |
adrenal gland | 100% | 3174.46 | 258 / 258 | 99% | 8.34 | 227 / 230 |
ovary | 100% | 3418.57 | 180 / 180 | 98% | 5.66 | 423 / 430 |
bladder | 100% | 3019.90 | 21 / 21 | 98% | 8.58 | 494 / 504 |
intestine | 100% | 2986.35 | 966 / 966 | 98% | 9.17 | 516 / 527 |
stomach | 100% | 2319.64 | 359 / 359 | 98% | 10.06 | 280 / 286 |
kidney | 100% | 2065.57 | 89 / 89 | 98% | 11.46 | 881 / 901 |
uterus | 100% | 3581.74 | 170 / 170 | 98% | 7.42 | 448 / 459 |
skin | 100% | 2805.07 | 1808 / 1809 | 90% | 8.86 | 427 / 472 |
liver | 100% | 1307.50 | 226 / 226 | 82% | 3.69 | 331 / 406 |
blood vessel | 100% | 2989.67 | 1335 / 1335 | 0% | 0 | 0 / 0 |
muscle | 100% | 3049.06 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 2247.30 | 241 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 2.20 | 1 / 1 |
adipose | 100% | 3337.41 | 1203 / 1204 | 0% | 0 | 0 / 0 |
heart | 98% | 2005.16 | 847 / 861 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 98% | 7.24 | 44 / 45 |
lymph node | 0% | 0 | 0 / 0 | 90% | 4.90 | 26 / 29 |
peripheral blood | 88% | 1380.42 | 816 / 929 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 61% | 3.18 | 49 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0006886 | Biological process | intracellular protein transport |
GO_0043547 | Biological process | positive regulation of GTPase activity |
GO_0009968 | Biological process | negative regulation of signal transduction |
GO_0031901 | Cellular component | early endosome membrane |
GO_0005769 | Cellular component | early endosome |
GO_0032266 | Molecular function | phosphatidylinositol-3-phosphate binding |
GO_0035091 | Molecular function | phosphatidylinositol binding |
Gene name | SNX13 |
Protein name | Alternative protein SNX13 Sorting nexin 13 Sorting nexin-13 (RGS domain- and PHOX domain-containing protein) (RGS-PX1) Sorting nexin 13, isoform CRA_e (cDNA FLJ13678 fis, clone PLACE1012031, highly similar to Sorting nexin-13) |
Synonyms | DKFZp761E0611 hCG_2009798 KIAA0713 |
Description | FUNCTION: May be involved in several stages of intracellular trafficking. May play a role in endosome homeostasis (By similarity). Acts as a GAP for Galphas. . |
Accessions | ENST00000409604.1 ENST00000611725.4 F8WB11 Q9NSH0 B3KN60 ENST00000444712.5 F8W8A9 ENST00000428135.7 [Q9Y5W8-2] Q86XC4 L8E8M6 ENST00000409076.6 Q9Y5W8 A0A087WUZ7 |