Name | Number of supported studies | Average coverage | |
---|---|---|---|
macrophage | 33 studies | 32% ± 16% | |
classical monocyte | 23 studies | 34% ± 11% | |
non-classical monocyte | 22 studies | 36% ± 12% | |
monocyte | 21 studies | 32% ± 10% | |
conventional dendritic cell | 21 studies | 27% ± 11% | |
B cell | 17 studies | 21% ± 5% | |
memory B cell | 12 studies | 20% ± 5% | |
naive B cell | 12 studies | 21% ± 3% | |
dendritic cell | 12 studies | 28% ± 15% | |
glutamatergic neuron | 10 studies | 40% ± 22% | |
myeloid cell | 9 studies | 34% ± 14% | |
alveolar macrophage | 8 studies | 62% ± 18% | |
GABAergic neuron | 7 studies | 39% ± 18% | |
neutrophil | 6 studies | 28% ± 7% | |
mononuclear phagocyte | 6 studies | 27% ± 11% | |
neuron | 6 studies | 25% ± 6% | |
microglial cell | 5 studies | 24% ± 10% | |
natural killer cell | 5 studies | 22% ± 4% | |
Mueller cell | 5 studies | 50% ± 15% | |
retinal ganglion cell | 4 studies | 74% ± 26% | |
abnormal cell | 4 studies | 30% ± 11% | |
plasmacytoid dendritic cell | 4 studies | 23% ± 7% | |
kidney distal convoluted tubule epithelial cell | 4 studies | 30% ± 8% | |
epithelial cell of proximal tubule | 3 studies | 22% ± 8% | |
kidney loop of Henle epithelial cell | 3 studies | 23% ± 5% | |
GABAergic interneuron | 3 studies | 22% ± 2% | |
inflammatory macrophage | 3 studies | 29% ± 16% | |
hepatocyte | 3 studies | 23% ± 5% | |
interneuron | 3 studies | 53% ± 17% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
kidney | 100% | 2758.10 | 89 / 89 | 95% | 72.75 | 857 / 901 |
lung | 99% | 1730.33 | 572 / 578 | 89% | 21.33 | 1032 / 1155 |
adrenal gland | 100% | 1343.85 | 257 / 258 | 88% | 23.12 | 203 / 230 |
liver | 100% | 1978.54 | 225 / 226 | 84% | 26.39 | 340 / 406 |
brain | 98% | 2983.94 | 2599 / 2642 | 79% | 30.08 | 557 / 705 |
breast | 86% | 836.26 | 395 / 459 | 90% | 21.28 | 1001 / 1118 |
pancreas | 55% | 427.41 | 180 / 328 | 85% | 13.91 | 151 / 178 |
uterus | 68% | 490.72 | 116 / 170 | 64% | 13.61 | 293 / 459 |
lymph node | 0% | 0 | 0 / 0 | 100% | 71.22 | 29 / 29 |
spleen | 100% | 1503.39 | 241 / 241 | 0% | 0 | 0 / 0 |
adipose | 97% | 1425.65 | 1163 / 1204 | 0% | 0 | 0 / 0 |
peripheral blood | 97% | 2487.85 | 897 / 929 | 0% | 0 | 0 / 0 |
skin | 3% | 13.90 | 57 / 1809 | 91% | 71.47 | 430 / 472 |
intestine | 33% | 197.60 | 321 / 966 | 60% | 10.16 | 314 / 527 |
esophagus | 6% | 25.16 | 85 / 1445 | 86% | 21.45 | 158 / 183 |
ovary | 6% | 39.29 | 11 / 180 | 75% | 12.37 | 323 / 430 |
stomach | 10% | 37.27 | 36 / 359 | 70% | 14.10 | 200 / 286 |
bladder | 10% | 60.48 | 2 / 21 | 66% | 11.66 | 333 / 504 |
tonsil | 0% | 0 | 0 / 0 | 67% | 11.19 | 30 / 45 |
thymus | 11% | 46.58 | 71 / 653 | 41% | 5.42 | 246 / 605 |
prostate | 15% | 60.91 | 37 / 245 | 25% | 2.78 | 125 / 502 |
eye | 0% | 0 | 0 / 0 | 21% | 3.60 | 17 / 80 |
blood vessel | 17% | 105.86 | 230 / 1335 | 0% | 0 | 0 / 0 |
heart | 3% | 12.61 | 26 / 861 | 0% | 0 | 0 / 0 |
muscle | 0% | 1.13 | 2 / 803 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0055074 | Biological process | calcium ion homeostasis |
GO_0060271 | Biological process | cilium assembly |
GO_0061512 | Biological process | protein localization to cilium |
GO_0006897 | Biological process | endocytosis |
GO_0030316 | Biological process | osteoclast differentiation |
GO_1990830 | Biological process | cellular response to leukemia inhibitory factor |
GO_0071539 | Biological process | protein localization to centrosome |
GO_0006886 | Biological process | intracellular protein transport |
GO_0097178 | Biological process | ruffle assembly |
GO_0019725 | Biological process | cellular homeostasis |
GO_0044691 | Biological process | tooth eruption |
GO_0016050 | Biological process | vesicle organization |
GO_0007032 | Biological process | endosome organization |
GO_0045453 | Biological process | bone resorption |
GO_0001696 | Biological process | gastric acid secretion |
GO_0035630 | Biological process | bone mineralization involved in bone maturation |
GO_0005813 | Cellular component | centrosome |
GO_0031313 | Cellular component | extrinsic component of endosome membrane |
GO_0090651 | Cellular component | apical cytoplasm |
GO_0005783 | Cellular component | endoplasmic reticulum |
GO_0030141 | Cellular component | secretory granule |
GO_0005768 | Cellular component | endosome |
GO_0005634 | Cellular component | nucleus |
GO_0005545 | Molecular function | 1-phosphatidylinositol binding |
GO_0051117 | Molecular function | ATPase binding |
GO_1901981 | Molecular function | phosphatidylinositol phosphate binding |
GO_0005515 | Molecular function | protein binding |
Gene name | SNX10 |
Protein name | Uncharacterized protein SNX10 Sorting nexin 10, isoform CRA_a (cDNA FLJ57312, highly similar to Sorting nexin-10) (cDNA, FLJ78987, highly similar to Sorting nexin-10) Sorting nexin 10 Sorting nexin-10 |
Synonyms | hCG_38389 |
Description | FUNCTION: Probable phosphoinositide-binding protein involved in protein sorting and membrane trafficking in endosomes. Plays a role in cilium biogenesis through regulation of the transport and the localization of proteins to the cilium. Required for the localization to the cilium of V-ATPase subunit ATP6V1D and ATP6V0D1, and RAB8A. Involved in osteoclast differentiation and therefore bone resorption. . |
Accessions | ENST00000698078.1 [Q9Y5X0-1] ENST00000409838.1 [Q9Y5X0-2] ENST00000698075.1 Q75MD2 ENST00000446848.6 [Q9Y5X0-1] ENST00000698086.1 ENST00000698077.1 A0A8V8TN62 ENST00000698079.1 [Q9Y5X0-1] B4DJM0 G5E9H5 ENST00000698089.1 A0A8V8TMW7 ENST00000698081.1 ENST00000338523.9 [Q9Y5X0-1] ENST00000698084.1 ENST00000698083.1 ENST00000409367.6 Q75MY3 ENST00000416246.6 ENST00000698087.1 ENST00000698088.1 [Q9Y5X0-1] ENST00000698074.1 A0A8V8TLE1 ENST00000698080.1 [Q9Y5X0-1] ENST00000698090.1 [Q9Y5X0-1] ENST00000396376.5 [Q9Y5X0-1] A0A8V8TLE4 Q8N5Z3 Q9Y5X0 ENST00000698076.1 A0A8V8TLG7 |