SNRK report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
endothelial cell	41 studies	33% ± 13%	Explore
pericyte	19 studies	28% ± 15%	Explore
natural killer cell	17 studies	23% ± 7%	Explore
capillary endothelial cell	15 studies	24% ± 11%	Explore
CD16-positive, CD56-dim natural killer cell, human	13 studies	23% ± 6%	Explore
CD16-negative, CD56-bright natural killer cell, human	12 studies	22% ± 4%	Explore
CD4-positive, alpha-beta T cell	10 studies	20% ± 6%	Explore
endothelial cell of artery	10 studies	22% ± 6%	Explore
vein endothelial cell	10 studies	29% ± 10%	Explore
T cell	9 studies	22% ± 6%	Explore
CD8-positive, alpha-beta T cell	9 studies	24% ± 5%	Explore
mucosal invariant T cell	9 studies	25% ± 7%	Explore
astrocyte	9 studies	27% ± 13%	Explore
endothelial cell of lymphatic vessel	8 studies	26% ± 8%	Explore
endothelial cell of vascular tree	8 studies	26% ± 12%	Explore
gamma-delta T cell	8 studies	23% ± 5%	Explore
effector memory CD8-positive, alpha-beta T cell	7 studies	24% ± 7%	Explore
mature NK T cell	7 studies	20% ± 3%	Explore
naive thymus-derived CD8-positive, alpha-beta T cell	7 studies	25% ± 8%	Explore
smooth muscle cell	7 studies	26% ± 9%	Explore
CD8-positive, alpha-beta memory T cell	7 studies	22% ± 5%	Explore
GABAergic neuron	7 studies	36% ± 17%	Explore
naive thymus-derived CD4-positive, alpha-beta T cell	6 studies	20% ± 5%	Explore
adipocyte	6 studies	29% ± 7%	Explore
glutamatergic neuron	5 studies	41% ± 17%	Explore
microglial cell	5 studies	23% ± 6%	Explore
regulatory T cell	5 studies	19% ± 2%	Explore
oligodendrocyte precursor cell	5 studies	25% ± 12%	Explore
macrophage	5 studies	26% ± 7%	Explore
classical monocyte	4 studies	23% ± 7%	Explore
leukocyte	4 studies	19% ± 4%	Explore
epithelial cell	4 studies	25% ± 5%	Explore
lymphocyte	4 studies	29% ± 10%	Explore
monocyte	4 studies	23% ± 4%	Explore
interneuron	4 studies	46% ± 18%	Explore
non-classical monocyte	3 studies	28% ± 12%	Explore
endothelial cell of sinusoid	3 studies	40% ± 23%	Explore
hematopoietic precursor cell	3 studies	26% ± 7%	Explore
GABAergic interneuron	3 studies	20% ± 4%	Explore
myeloid cell	3 studies	17% ± 1%	Explore
retinal bipolar neuron	3 studies	16% ± 1%	Explore
ciliated cell	3 studies	24% ± 4%	Explore
rod bipolar cell	3 studies	25% ± 7%	Explore
effector memory CD4-positive, alpha-beta T cell	3 studies	23% ± 10%	Explore
innate lymphoid cell	3 studies	20% ± 3%	Explore
neutrophil	3 studies	19% ± 3%	Explore
group 3 innate lymphoid cell	3 studies	23% ± 4%	Explore
fibroblast	3 studies	24% ± 3%	Explore
neuron	3 studies	29% ± 5%	Explore
CD4-positive, alpha-beta memory T cell	3 studies	23% ± 2%	Explore
mural cell	3 studies	44% ± 5%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
brain	7 studies	31% ± 12%	Explore
peripheral blood	5 studies	23% ± 4%	Explore
bone marrow	3 studies	17% ± 3%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
esophagus	100%	3060.65	1445 / 1445	100%	16.17	183 / 183
lung	100%	5740.76	578 / 578	100%	12.33	1155 / 1155
thymus	100%	6034.95	653 / 653	100%	21.81	605 / 605
breast	100%	5873.46	459 / 459	100%	17.81	1117 / 1118
kidney	100%	3059.33	89 / 89	100%	31.35	900 / 901
bladder	100%	2962.67	21 / 21	100%	10.08	502 / 504
prostate	100%	2595.91	244 / 245	100%	13.79	501 / 502
uterus	100%	4331.25	170 / 170	99%	12.29	456 / 459
pancreas	99%	1639.69	326 / 328	99%	16.04	177 / 178
intestine	100%	3152.57	966 / 966	98%	10.78	517 / 527
brain	98%	2672.64	2591 / 2642	100%	17.06	705 / 705
ovary	99%	2982.30	179 / 180	99%	7.37	424 / 430
stomach	99%	2078.72	357 / 359	98%	13.11	281 / 286
liver	98%	1424.83	221 / 226	100%	9.70	404 / 406
skin	99%	4485.51	1794 / 1809	98%	19.12	462 / 472
adrenal gland	97%	1486.78	250 / 258	98%	16.81	225 / 230
adipose	100%	7144.50	1204 / 1204	0%	0	0 / 0
blood vessel	100%	3119.27	1335 / 1335	0%	0	0 / 0
lymph node	0%	0	0 / 0	100%	10.59	29 / 29
spleen	100%	4546.85	241 / 241	0%	0	0 / 0
ureter	0%	0	0 / 0	100%	5.44	1 / 1
muscle	99%	1730.43	792 / 803	0%	0	0 / 0
tonsil	0%	0	0 / 0	98%	11.25	44 / 45
heart	97%	1999.57	839 / 861	0%	0	0 / 0
peripheral blood	92%	2387.05	859 / 929	0%	0	0 / 0
eye	0%	0	0 / 0	88%	8.52	70 / 80
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0