Name | Number of supported studies | Average coverage | |
---|---|---|---|
classical monocyte | 5 studies | 21% ± 6% | |
endothelial cell | 5 studies | 29% ± 7% | |
epithelial cell | 5 studies | 32% ± 14% | |
ciliated cell | 5 studies | 30% ± 7% | |
macrophage | 4 studies | 24% ± 6% | |
plasmacytoid dendritic cell | 4 studies | 23% ± 5% | |
conventional dendritic cell | 3 studies | 34% ± 12% | |
hematopoietic precursor cell | 3 studies | 19% ± 3% | |
non-classical monocyte | 3 studies | 22% ± 3% | |
pericyte | 3 studies | 20% ± 4% | |
smooth muscle cell | 3 studies | 21% ± 3% | |
fibroblast | 3 studies | 25% ± 7% | |
regulatory T cell | 3 studies | 18% ± 2% | |
dendritic cell | 3 studies | 31% ± 4% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
lung | 4 studies | 25% ± 10% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 1790.32 | 1445 / 1445 | 100% | 42.56 | 183 / 183 |
liver | 100% | 912.31 | 226 / 226 | 100% | 58.07 | 406 / 406 |
ovary | 100% | 1440.36 | 180 / 180 | 100% | 93.26 | 430 / 430 |
uterus | 100% | 1632.52 | 170 / 170 | 100% | 85.74 | 459 / 459 |
brain | 100% | 1468.28 | 2641 / 2642 | 100% | 112.72 | 705 / 705 |
thymus | 100% | 1764.35 | 653 / 653 | 100% | 83.32 | 604 / 605 |
breast | 100% | 1696.35 | 459 / 459 | 100% | 94.60 | 1116 / 1118 |
prostate | 100% | 1624.63 | 245 / 245 | 100% | 64.34 | 501 / 502 |
skin | 100% | 1466.08 | 1809 / 1809 | 100% | 75.32 | 471 / 472 |
kidney | 100% | 1636.35 | 89 / 89 | 100% | 59.42 | 899 / 901 |
stomach | 100% | 1167.70 | 359 / 359 | 100% | 44.26 | 285 / 286 |
lung | 100% | 1247.12 | 576 / 578 | 100% | 82.65 | 1153 / 1155 |
intestine | 100% | 1616.56 | 966 / 966 | 99% | 46.95 | 524 / 527 |
bladder | 100% | 1678.14 | 21 / 21 | 99% | 67.55 | 500 / 504 |
adrenal gland | 100% | 2408.07 | 258 / 258 | 99% | 54.82 | 227 / 230 |
pancreas | 96% | 576.57 | 315 / 328 | 99% | 54.28 | 177 / 178 |
adipose | 100% | 1778.43 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 1797.64 | 1335 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 81.59 | 29 / 29 |
muscle | 100% | 2172.52 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 1700.41 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 76.07 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 39.08 | 1 / 1 |
heart | 100% | 1802.41 | 860 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 99% | 54.02 | 79 / 80 |
peripheral blood | 90% | 986.13 | 837 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0007040 | Biological process | lysosome organization |
GO_0016188 | Biological process | synaptic vesicle maturation |
GO_0051036 | Biological process | regulation of endosome size |
GO_0062196 | Biological process | regulation of lysosome size |
GO_0008090 | Biological process | retrograde axonal transport |
GO_0007042 | Biological process | lysosomal lumen acidification |
GO_0031175 | Biological process | neuron projection development |
GO_0007269 | Biological process | neurotransmitter secretion |
GO_0008089 | Biological process | anterograde axonal transport |
GO_0072384 | Biological process | organelle transport along microtubule |
GO_0006886 | Biological process | intracellular protein transport |
GO_0016079 | Biological process | synaptic vesicle exocytosis |
GO_0032438 | Biological process | melanosome organization |
GO_0043393 | Biological process | regulation of protein binding |
GO_0048490 | Biological process | anterograde synaptic vesicle transport |
GO_0070050 | Biological process | neuron cellular homeostasis |
GO_0010977 | Biological process | negative regulation of neuron projection development |
GO_1902824 | Biological process | positive regulation of late endosome to lysosome transport |
GO_0008333 | Biological process | endosome to lysosome transport |
GO_0032418 | Biological process | lysosome localization |
GO_1902774 | Biological process | late endosome to lysosome transport |
GO_0072553 | Biological process | terminal button organization |
GO_0031629 | Biological process | synaptic vesicle fusion to presynaptic active zone membrane |
GO_0097352 | Biological process | autophagosome maturation |
GO_0031503 | Biological process | protein-containing complex localization |
GO_2000300 | Biological process | regulation of synaptic vesicle exocytosis |
GO_0051604 | Biological process | protein maturation |
GO_0048489 | Biological process | synaptic vesicle transport |
GO_0099078 | Cellular component | BORC complex |
GO_0001669 | Cellular component | acrosomal vesicle |
GO_0048471 | Cellular component | perinuclear region of cytoplasm |
GO_1990742 | Cellular component | microvesicle |
GO_0030672 | Cellular component | synaptic vesicle membrane |
GO_0002177 | Cellular component | manchette |
GO_0098574 | Cellular component | cytoplasmic side of lysosomal membrane |
GO_0000139 | Cellular component | Golgi membrane |
GO_0005829 | Cellular component | cytosol |
GO_0008021 | Cellular component | synaptic vesicle |
GO_0045202 | Cellular component | synapse |
GO_0031083 | Cellular component | BLOC-1 complex |
GO_0030141 | Cellular component | secretory granule |
GO_1904115 | Cellular component | axon cytoplasm |
GO_0000149 | Molecular function | SNARE binding |
GO_0005515 | Molecular function | protein binding |
Gene name | SNAPIN |
Protein name | SNARE-associated protein Snapin (Biogenesis of lysosome-related organelles complex 1 subunit 7) (BLOC-1 subunit 7) (Synaptosomal-associated protein 25-binding protein) (SNAP-associated protein) |
Synonyms | SNAPAP BLOC1S7 SNAP25BP |
Description | FUNCTION: Component of the BLOC-1 complex, a complex that is required for normal biogenesis of lysosome-related organelles (LRO), such as platelet dense granules and melanosomes. In concert with the AP-3 complex, the BLOC-1 complex is required to target membrane protein cargos into vesicles assembled at cell bodies for delivery into neurites and nerve terminals. The BLOC-1 complex, in association with SNARE proteins, is also proposed to be involved in neurite extension. Plays a role in intracellular vesicle trafficking and synaptic vesicle recycling. May modulate a step between vesicle priming, fusion and calcium-dependent neurotransmitter release through its ability to potentiate the interaction of synaptotagmin with the SNAREs and the plasma-membrane-associated protein SNAP25. Its phosphorylation state influences exocytotic protein interactions and may regulate synaptic vesicle exocytosis. May also have a role in the mechanisms of SNARE-mediated membrane fusion in non-neuronal cells . As part of the BORC complex may play a role in lysosomes movement and localization at the cell periphery. Associated with the cytosolic face of lysosomes, the BORC complex may recruit ARL8B and couple lysosomes to microtubule plus-end-directed kinesin motor . . |
Accessions | ENST00000368685.6 O95295 |