SMIM30 report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
endothelial cell	10 studies	29% ± 15%	Explore
macrophage	10 studies	32% ± 13%	Explore
smooth muscle cell	9 studies	22% ± 5%	Explore
pericyte	8 studies	22% ± 9%	Explore
epithelial cell of proximal tubule	7 studies	24% ± 10%	Explore
epithelial cell	7 studies	37% ± 23%	Explore
fibroblast	6 studies	27% ± 10%	Explore
kidney loop of Henle epithelial cell	5 studies	25% ± 8%	Explore
ciliated cell	5 studies	34% ± 11%	Explore
endothelial cell of lymphatic vessel	5 studies	30% ± 10%	Explore
basal cell	5 studies	33% ± 21%	Explore
hematopoietic precursor cell	4 studies	23% ± 4%	Explore
connective tissue cell	4 studies	23% ± 8%	Explore
endothelial cell of artery	4 studies	19% ± 5%	Explore
myeloid cell	4 studies	24% ± 9%	Explore
type II pneumocyte	4 studies	32% ± 21%	Explore
dendritic cell	4 studies	26% ± 2%	Explore
conventional dendritic cell	3 studies	34% ± 12%	Explore
myofibroblast cell	3 studies	22% ± 2%	Explore
kidney distal convoluted tubule epithelial cell	3 studies	24% ± 3%	Explore
capillary endothelial cell	3 studies	16% ± 1%	Explore
monocyte	3 studies	27% ± 8%	Explore
endothelial cell of vascular tree	3 studies	18% ± 3%	Explore
granulocyte monocyte progenitor cell	3 studies	24% ± 6%	Explore
mononuclear phagocyte	3 studies	27% ± 15%	Explore
plasmacytoid dendritic cell	3 studies	26% ± 5%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
lung	6 studies	25% ± 9%	Explore
kidney	5 studies	19% ± 2%	Explore
intestine	3 studies	26% ± 13%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
adrenal gland	100%	1867.69	258 / 258	100%	66.18	230 / 230
uterus	100%	849.78	170 / 170	100%	55.65	458 / 459
ovary	100%	770.78	180 / 180	100%	63.19	429 / 430
brain	100%	1164.14	2634 / 2642	100%	77.66	705 / 705
kidney	100%	1757.76	89 / 89	100%	73.46	898 / 901
breast	100%	1056.39	459 / 459	100%	60.86	1114 / 1118
prostate	100%	1015.52	245 / 245	100%	52.93	500 / 502
thymus	100%	1340.04	652 / 653	100%	69.99	603 / 605
lung	99%	1084.36	574 / 578	100%	59.64	1152 / 1155
bladder	100%	1180.86	21 / 21	99%	61.58	499 / 504
esophagus	100%	1180.95	1445 / 1445	98%	48.92	180 / 183
pancreas	99%	650.87	324 / 328	99%	49.69	177 / 178
intestine	100%	1106.90	966 / 966	97%	40.62	511 / 527
stomach	100%	854.48	359 / 359	96%	39.97	274 / 286
skin	96%	1033.06	1729 / 1809	100%	81.72	471 / 472
liver	97%	559.77	220 / 226	88%	27.36	356 / 406
lymph node	0%	0	0 / 0	100%	43.65	29 / 29
muscle	100%	2074.35	803 / 803	0%	0	0 / 0
spleen	100%	1245.34	241 / 241	0%	0	0 / 0
ureter	0%	0	0 / 0	100%	22.14	1 / 1
adipose	100%	1104.84	1203 / 1204	0%	0	0 / 0
blood vessel	100%	1350.95	1331 / 1335	0%	0	0 / 0
heart	98%	2586.42	846 / 861	0%	0	0 / 0
eye	0%	0	0 / 0	98%	56.81	78 / 80
tonsil	0%	0	0 / 0	96%	37.15	43 / 45
peripheral blood	28%	534.12	260 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0