Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 28 studies | 28% ± 9% | |
oligodendrocyte | 13 studies | 56% ± 16% | |
capillary endothelial cell | 11 studies | 25% ± 8% | |
oligodendrocyte precursor cell | 7 studies | 39% ± 9% | |
endothelial cell of artery | 6 studies | 21% ± 4% | |
vein endothelial cell | 5 studies | 34% ± 10% | |
endothelial cell of vascular tree | 5 studies | 31% ± 11% | |
type I pneumocyte | 5 studies | 31% ± 8% | |
type II pneumocyte | 5 studies | 31% ± 9% | |
glomerular endothelial cell | 3 studies | 29% ± 3% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
kidney | 100% | 1756.39 | 89 / 89 | 89% | 11.17 | 802 / 901 |
thymus | 100% | 1619.71 | 653 / 653 | 87% | 22.08 | 525 / 605 |
brain | 87% | 1161.06 | 2287 / 2642 | 95% | 6.87 | 669 / 705 |
breast | 100% | 2528.55 | 459 / 459 | 81% | 4.59 | 909 / 1118 |
intestine | 93% | 751.84 | 902 / 966 | 87% | 7.45 | 458 / 527 |
esophagus | 99% | 1073.91 | 1425 / 1445 | 79% | 5.31 | 145 / 183 |
lung | 100% | 6117.87 | 578 / 578 | 77% | 5.94 | 894 / 1155 |
skin | 89% | 625.18 | 1608 / 1809 | 85% | 6.65 | 400 / 472 |
bladder | 95% | 1142.29 | 20 / 21 | 64% | 4.57 | 321 / 504 |
stomach | 67% | 441.03 | 240 / 359 | 89% | 8.65 | 255 / 286 |
adrenal gland | 100% | 799.23 | 257 / 258 | 53% | 2.70 | 123 / 230 |
uterus | 100% | 1551.62 | 170 / 170 | 47% | 2.58 | 214 / 459 |
prostate | 99% | 1091.62 | 243 / 245 | 46% | 1.61 | 230 / 502 |
ovary | 86% | 572.87 | 155 / 180 | 57% | 2.94 | 247 / 430 |
adipose | 100% | 3197.99 | 1204 / 1204 | 0% | 0 | 0 / 0 |
heart | 100% | 1650.67 | 860 / 861 | 0% | 0 | 0 / 0 |
blood vessel | 96% | 944.01 | 1287 / 1335 | 0% | 0 | 0 / 0 |
pancreas | 13% | 53.68 | 43 / 328 | 76% | 3.73 | 135 / 178 |
muscle | 86% | 527.62 | 691 / 803 | 0% | 0 | 0 / 0 |
spleen | 55% | 284.34 | 132 / 241 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 46% | 1.70 | 37 / 80 |
tonsil | 0% | 0 | 0 / 0 | 40% | 1.75 | 18 / 45 |
liver | 9% | 36.95 | 20 / 226 | 15% | 0.47 | 60 / 406 |
lymph node | 0% | 0 | 0 / 0 | 10% | 0.24 | 3 / 29 |
peripheral blood | 1% | 4.44 | 12 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0030036 | Biological process | actin cytoskeleton organization |
GO_0007015 | Biological process | actin filament organization |
GO_0007420 | Biological process | brain development |
GO_0050890 | Biological process | cognition |
GO_0000902 | Biological process | cell morphogenesis |
GO_0016324 | Cellular component | apical plasma membrane |
GO_0009898 | Cellular component | cytoplasmic side of plasma membrane |
GO_0005654 | Cellular component | nucleoplasm |
GO_0030864 | Cellular component | cortical actin cytoskeleton |
GO_0009925 | Cellular component | basal plasma membrane |
GO_0005884 | Cellular component | actin filament |
GO_0005925 | Cellular component | focal adhesion |
GO_0001725 | Cellular component | stress fiber |
GO_0043296 | Cellular component | apical junction complex |
GO_0015629 | Cellular component | actin cytoskeleton |
GO_0005912 | Cellular component | adherens junction |
GO_0005737 | Cellular component | cytoplasm |
GO_0043231 | Cellular component | intracellular membrane-bounded organelle |
GO_0045159 | Molecular function | myosin II binding |
GO_0051015 | Molecular function | actin filament binding |
Gene name | SHROOM4 |
Protein name | Protein Shroom4 (Second homolog of apical protein) |
Synonyms | SHAP KIAA1202 |
Description | FUNCTION: Probable regulator of cytoskeletal architecture that plays an important role in development. May regulate cellular and cytoskeletal architecture by modulating the spatial distribution of myosin II (By similarity). . |
Accessions | ENST00000376020.9 [Q9ULL8-1] ENST00000289292.11 [Q9ULL8-1] ENST00000460112.3 [Q9ULL8-2] Q9ULL8 |