Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 31 studies | 38% ± 16% | |
capillary endothelial cell | 12 studies | 27% ± 13% | |
vein endothelial cell | 7 studies | 32% ± 22% | |
endothelial cell of lymphatic vessel | 6 studies | 42% ± 18% | |
endothelial cell of artery | 6 studies | 21% ± 6% | |
endothelial cell of vascular tree | 5 studies | 35% ± 23% | |
oligodendrocyte | 4 studies | 25% ± 4% | |
endothelial cell of sinusoid | 3 studies | 45% ± 13% | |
glutamatergic neuron | 3 studies | 32% ± 13% | |
glomerular endothelial cell | 3 studies | 28% ± 11% | |
oligodendrocyte precursor cell | 3 studies | 25% ± 8% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 3 studies | 33% ± 6% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
thymus | 100% | 11438.31 | 651 / 653 | 98% | 16.68 | 593 / 605 |
brain | 98% | 16912.91 | 2576 / 2642 | 98% | 20.46 | 694 / 705 |
breast | 100% | 23467.38 | 459 / 459 | 95% | 10.54 | 1066 / 1118 |
kidney | 100% | 9793.12 | 89 / 89 | 95% | 23.65 | 852 / 901 |
lung | 100% | 16842.57 | 577 / 578 | 93% | 10.31 | 1078 / 1155 |
esophagus | 91% | 5794.75 | 1317 / 1445 | 99% | 19.51 | 182 / 183 |
prostate | 96% | 6297.81 | 236 / 245 | 91% | 7.25 | 456 / 502 |
uterus | 100% | 11335.72 | 170 / 170 | 84% | 6.85 | 384 / 459 |
bladder | 95% | 6963.33 | 20 / 21 | 84% | 6.33 | 422 / 504 |
liver | 81% | 3081.12 | 183 / 226 | 97% | 12.40 | 393 / 406 |
adrenal gland | 79% | 3218.69 | 203 / 258 | 92% | 15.07 | 212 / 230 |
intestine | 83% | 4273.67 | 803 / 966 | 82% | 7.52 | 434 / 527 |
stomach | 70% | 3098.73 | 253 / 359 | 90% | 12.05 | 258 / 286 |
skin | 56% | 2832.13 | 1017 / 1809 | 94% | 12.91 | 446 / 472 |
ovary | 46% | 2204.25 | 83 / 180 | 93% | 9.20 | 400 / 430 |
pancreas | 20% | 646.15 | 65 / 328 | 96% | 10.94 | 171 / 178 |
adipose | 100% | 22585.84 | 1204 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 16.59 | 80 / 80 |
spleen | 100% | 39968.08 | 241 / 241 | 0% | 0 | 0 / 0 |
heart | 99% | 8492.75 | 853 / 861 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 93% | 7.32 | 42 / 45 |
muscle | 78% | 3030.60 | 628 / 803 | 0% | 0 | 0 / 0 |
blood vessel | 57% | 3450.69 | 767 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 52% | 2.75 | 15 / 29 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 0 | 0 / 929 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0048170 | Biological process | positive regulation of long-term neuronal synaptic plasticity |
GO_1900271 | Biological process | regulation of long-term synaptic potentiation |
GO_0021773 | Biological process | striatal medium spiny neuron differentiation |
GO_0042297 | Biological process | vocal learning |
GO_0000165 | Biological process | MAPK cascade |
GO_0007612 | Biological process | learning |
GO_0060997 | Biological process | dendritic spine morphogenesis |
GO_1900452 | Biological process | regulation of long-term synaptic depression |
GO_0097113 | Biological process | AMPA glutamate receptor clustering |
GO_0050885 | Biological process | neuromuscular process controlling balance |
GO_0097114 | Biological process | NMDA glutamate receptor clustering |
GO_2000463 | Biological process | positive regulation of excitatory postsynaptic potential |
GO_0071625 | Biological process | vocalization behavior |
GO_0051835 | Biological process | positive regulation of synapse structural plasticity |
GO_0061001 | Biological process | regulation of dendritic spine morphogenesis |
GO_1900451 | Biological process | positive regulation of glutamate receptor signaling pathway |
GO_0060999 | Biological process | positive regulation of dendritic spine development |
GO_1900273 | Biological process | positive regulation of long-term synaptic potentiation |
GO_0030534 | Biological process | adult behavior |
GO_0007613 | Biological process | memory |
GO_0048854 | Biological process | brain morphogenesis |
GO_0051968 | Biological process | positive regulation of synaptic transmission, glutamatergic |
GO_0097117 | Biological process | guanylate kinase-associated protein clustering |
GO_0007416 | Biological process | synapse assembly |
GO_0035176 | Biological process | social behavior |
GO_0032232 | Biological process | negative regulation of actin filament bundle assembly |
GO_0045794 | Biological process | negative regulation of cell volume |
GO_0097107 | Biological process | postsynaptic density assembly |
GO_0005886 | Cellular component | plasma membrane |
GO_0043197 | Cellular component | dendritic spine |
GO_0044309 | Cellular component | neuron spine |
GO_0043005 | Cellular component | neuron projection |
GO_0060170 | Cellular component | ciliary membrane |
GO_0005829 | Cellular component | cytosol |
GO_0014069 | Cellular component | postsynaptic density |
GO_0045211 | Cellular component | postsynaptic membrane |
GO_0030160 | Molecular function | synaptic receptor adaptor activity |
GO_0097110 | Molecular function | scaffold protein binding |
GO_0008270 | Molecular function | zinc ion binding |
GO_0035255 | Molecular function | ionotropic glutamate receptor binding |
GO_0005515 | Molecular function | protein binding |
GO_0003779 | Molecular function | actin binding |
GO_0017124 | Molecular function | SH3 domain binding |
Gene name | SHANK3 |
Protein name | SH3 and multiple ankyrin repeat domain 3 SH3 and multiple ankyrin repeat domains protein 3 (Shank3) (Proline-rich synapse-associated protein 2) (ProSAP2) SHANK3 protein SHANK3 SH3 and multiple ankyrin repeat domains 3 |
Synonyms | PROSAP2 PSAP2 KIAA1650 |
Description | FUNCTION: Major scaffold postsynaptic density protein which interacts with multiple proteins and complexes to orchestrate the dendritic spine and synapse formation, maturation and maintenance. Interconnects receptors of the postsynaptic membrane including NMDA-type and metabotropic glutamate receptors via complexes with GKAP/PSD-95 and HOMER, respectively, and the actin-based cytoskeleton. Plays a role in the structural and functional organization of the dendritic spine and synaptic junction through the interaction with Arp2/3 and WAVE1 complex as well as the promotion of the F-actin clusters. By way of this control of actin dynamics, participates in the regulation of developing neurons growth cone motility and the NMDA receptor-signaling. Also modulates GRIA1 exocytosis and GRM5/MGLUR5 expression and signaling to control the AMPA and metabotropic glutamate receptor-mediated synaptic transmission and plasticity. May be required at an early stage of synapse formation and be inhibited by IGF1 to promote synapse maturation. . |
Accessions | F8TCV2 Q9BYB0 A0A0U1RQS4 A0A590UJY5 ENST00000659388.1 A0A669KBA8 Q3S3B4 ENST00000262795.7 ENST00000445220.7 ENST00000673995.1 A0A669K9V7 F8TCV3 A0A0U1RR93 ENST00000664402.2 F8TCV1 ENST00000692848.1 A0A8I5KZC4 ENST00000673971.2 A0A590UJL3 Q6P5A2 |