Name | Number of supported studies | Average coverage | |
---|---|---|---|
microglial cell | 6 studies | 25% ± 7% | |
astrocyte | 5 studies | 33% ± 13% | |
oligodendrocyte precursor cell | 5 studies | 27% ± 9% | |
epithelial cell | 4 studies | 19% ± 5% | |
GABAergic neuron | 4 studies | 37% ± 14% | |
interneuron | 4 studies | 37% ± 20% | |
endothelial cell | 3 studies | 25% ± 4% | |
glutamatergic neuron | 3 studies | 45% ± 9% | |
ciliated cell | 3 studies | 17% ± 2% | |
lymphocyte | 3 studies | 21% ± 5% | |
macrophage | 3 studies | 21% ± 3% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 5 studies | 34% ± 14% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 792.27 | 1445 / 1445 | 100% | 13.13 | 183 / 183 |
stomach | 100% | 777.46 | 359 / 359 | 100% | 12.43 | 285 / 286 |
prostate | 100% | 840.04 | 245 / 245 | 100% | 7.57 | 500 / 502 |
breast | 100% | 768.75 | 459 / 459 | 100% | 14.40 | 1113 / 1118 |
pancreas | 100% | 949.74 | 328 / 328 | 99% | 10.50 | 177 / 178 |
bladder | 100% | 957.48 | 21 / 21 | 99% | 12.19 | 501 / 504 |
intestine | 100% | 907.17 | 966 / 966 | 99% | 11.63 | 523 / 527 |
lung | 100% | 748.88 | 577 / 578 | 99% | 9.17 | 1147 / 1155 |
uterus | 100% | 469.48 | 170 / 170 | 99% | 11.70 | 455 / 459 |
skin | 100% | 833.34 | 1809 / 1809 | 99% | 11.74 | 467 / 472 |
brain | 98% | 433.12 | 2601 / 2642 | 100% | 6.80 | 704 / 705 |
liver | 100% | 654.07 | 226 / 226 | 96% | 5.88 | 389 / 406 |
ovary | 97% | 284.71 | 174 / 180 | 99% | 10.08 | 425 / 430 |
thymus | 100% | 879.00 | 653 / 653 | 95% | 5.52 | 577 / 605 |
kidney | 100% | 639.06 | 89 / 89 | 94% | 6.70 | 851 / 901 |
adrenal gland | 100% | 480.02 | 258 / 258 | 80% | 3.62 | 184 / 230 |
adipose | 100% | 594.99 | 1204 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 9.68 | 29 / 29 |
muscle | 100% | 1550.24 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 803.91 | 241 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 4.01 | 1 / 1 |
blood vessel | 100% | 471.47 | 1332 / 1335 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 98% | 10.97 | 44 / 45 |
heart | 96% | 681.09 | 829 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 88% | 558.48 | 819 / 929 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 85% | 4.24 | 68 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0006325 | Biological process | chromatin organization |
GO_0048635 | Biological process | negative regulation of muscle organ development |
GO_0007283 | Biological process | spermatogenesis |
GO_0030154 | Biological process | cell differentiation |
GO_0045892 | Biological process | negative regulation of DNA-templated transcription |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005634 | Cellular component | nucleus |
GO_0003714 | Molecular function | transcription corepressor activity |
GO_0005515 | Molecular function | protein binding |
GO_0042393 | Molecular function | histone binding |
GO_0003682 | Molecular function | chromatin binding |
Gene name | SFMBT1 |
Protein name | Scm like with four mbt domains 1 Scm-like with four MBT domains protein 1 (hSFMBT) (Renal ubiquitous protein 1) |
Synonyms | RU1 |
Description | FUNCTION: Histone-binding protein, which is part of various corepressor complexes. Mediates the recruitment of corepressor complexes to target genes, followed by chromatin compaction and repression of transcription. Plays a role during myogenesis: required for the maintenance of undifferentiated states of myogenic progenitor cells via interaction with MYOD1. Interaction with MYOD1 leads to the recruitment of associated corepressors and silencing of MYOD1 target genes. Part of the SLC complex in germ cells, where it may play a role during spermatogenesis. . |
Accessions | C9IY64 ENST00000483069.5 C9JWI3 ENST00000497586.5 C9IZZ5 ENST00000482396.5 ENST00000394752.8 [Q9UHJ3-1] Q9UHJ3 |