Name | Number of supported studies | Average coverage | |
---|---|---|---|
basal cell | 11 studies | 30% ± 13% | |
astrocyte | 11 studies | 34% ± 15% | |
ciliated cell | 7 studies | 22% ± 3% | |
B cell | 6 studies | 20% ± 2% | |
club cell | 6 studies | 22% ± 5% | |
epithelial cell | 5 studies | 32% ± 17% | |
type II pneumocyte | 5 studies | 21% ± 3% | |
retinal rod cell | 4 studies | 29% ± 10% | |
cardiac muscle cell | 4 studies | 21% ± 5% | |
GABAergic neuron | 4 studies | 37% ± 13% | |
type I pneumocyte | 3 studies | 17% ± 1% | |
glutamatergic neuron | 3 studies | 46% ± 12% | |
respiratory goblet cell | 3 studies | 37% ± 8% | |
Schwann cell | 3 studies | 35% ± 14% | |
oligodendrocyte | 3 studies | 27% ± 6% | |
memory B cell | 3 studies | 25% ± 11% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 12150.21 | 1444 / 1445 | 100% | 156.95 | 183 / 183 |
intestine | 100% | 8494.11 | 966 / 966 | 98% | 65.54 | 514 / 527 |
lung | 99% | 4214.29 | 571 / 578 | 99% | 132.20 | 1138 / 1155 |
prostate | 100% | 7716.65 | 245 / 245 | 97% | 46.18 | 488 / 502 |
thymus | 100% | 7931.15 | 653 / 653 | 97% | 62.33 | 586 / 605 |
bladder | 100% | 6625.76 | 21 / 21 | 95% | 109.27 | 481 / 504 |
pancreas | 98% | 4018.94 | 322 / 328 | 97% | 97.13 | 173 / 178 |
stomach | 100% | 4677.56 | 359 / 359 | 95% | 58.20 | 271 / 286 |
uterus | 100% | 3802.08 | 170 / 170 | 94% | 149.05 | 433 / 459 |
ovary | 100% | 4275.39 | 180 / 180 | 92% | 44.28 | 394 / 430 |
brain | 94% | 2917.33 | 2487 / 2642 | 95% | 45.27 | 673 / 705 |
kidney | 99% | 7164.85 | 88 / 89 | 89% | 48.19 | 802 / 901 |
breast | 93% | 4776.21 | 428 / 459 | 94% | 61.44 | 1048 / 1118 |
adrenal gland | 100% | 6767.26 | 258 / 258 | 73% | 24.79 | 167 / 230 |
skin | 87% | 6569.75 | 1568 / 1809 | 63% | 24.30 | 298 / 472 |
liver | 99% | 4758.09 | 223 / 226 | 43% | 14.40 | 176 / 406 |
spleen | 100% | 6306.25 | 241 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 46.27 | 1 / 1 |
tonsil | 0% | 0 | 0 / 0 | 98% | 151.36 | 44 / 45 |
blood vessel | 90% | 2763.19 | 1198 / 1335 | 0% | 0 | 0 / 0 |
adipose | 90% | 2139.29 | 1079 / 1204 | 0% | 0 | 0 / 0 |
peripheral blood | 90% | 4100.40 | 832 / 929 | 0% | 0 | 0 / 0 |
heart | 89% | 2883.33 | 767 / 861 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 38% | 8.09 | 11 / 29 |
eye | 0% | 0 | 0 / 0 | 24% | 5.89 | 19 / 80 |
muscle | 19% | 354.44 | 151 / 803 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0071526 | Biological process | semaphorin-plexin signaling pathway |
GO_0030335 | Biological process | positive regulation of cell migration |
GO_0001755 | Biological process | neural crest cell migration |
GO_0007411 | Biological process | axon guidance |
GO_0050919 | Biological process | negative chemotaxis |
GO_0098978 | Cellular component | glutamatergic synapse |
GO_0098839 | Cellular component | postsynaptic density membrane |
GO_0005886 | Cellular component | plasma membrane |
GO_0045499 | Molecular function | chemorepellent activity |
GO_0030215 | Molecular function | semaphorin receptor binding |
GO_0005515 | Molecular function | protein binding |
Gene name | SEMA4B |
Protein name | Semaphorin-4B (Semaphorin-C) Semaphorin 4B SEMA4B protein |
Synonyms | KIAA1745 SEMAC UNQ749/PRO1480 |
Description | FUNCTION: Inhibits axonal extension by providing local signals to specify territories inaccessible for growing axons. . |
Accessions | ENST00000559300.5 H0YLN3 ENST00000559322.5 ENST00000561085.1 H0YNC4 Q9NPR2 ENST00000558895.5 H0YM68 ENST00000411539.7 [Q9NPR2-1] ENST00000560089.5 ENST00000332496.10 [Q9NPR2-1] ENST00000559792.5 H0YMZ3 ENST00000559983.5 H0YN49 H0YKV7 Q4VBY2 H0YMD6 H0YMR1 H0YNM2 ENST00000559074.5 ENST00000559247.1 |