Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 8 studies | 20% ± 4% | |
astrocyte | 5 studies | 26% ± 4% | |
fibroblast | 4 studies | 22% ± 6% | |
oligodendrocyte | 4 studies | 25% ± 3% | |
epithelial cell | 3 studies | 29% ± 5% | |
ciliated cell | 3 studies | 22% ± 3% | |
GABAergic neuron | 3 studies | 36% ± 4% | |
glutamatergic neuron | 3 studies | 46% ± 4% | |
pancreatic A cell | 3 studies | 29% ± 10% | |
endothelial cell of lymphatic vessel | 3 studies | 17% ± 2% | |
neuron | 3 studies | 24% ± 6% | |
mast cell | 3 studies | 19% ± 3% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 4 studies | 34% ± 6% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
prostate | 100% | 4496.02 | 245 / 245 | 100% | 54.20 | 502 / 502 |
brain | 100% | 3381.04 | 2641 / 2642 | 100% | 30.43 | 705 / 705 |
breast | 100% | 3999.41 | 459 / 459 | 100% | 26.19 | 1116 / 1118 |
ovary | 100% | 3920.04 | 180 / 180 | 100% | 11.84 | 429 / 430 |
skin | 100% | 2688.64 | 1809 / 1809 | 100% | 27.43 | 470 / 472 |
lung | 100% | 4001.21 | 578 / 578 | 99% | 13.80 | 1149 / 1155 |
thymus | 100% | 3335.42 | 653 / 653 | 99% | 18.43 | 601 / 605 |
kidney | 100% | 2547.33 | 89 / 89 | 98% | 14.58 | 887 / 901 |
pancreas | 100% | 2092.11 | 327 / 328 | 98% | 14.35 | 175 / 178 |
adrenal gland | 100% | 2756.14 | 258 / 258 | 97% | 24.75 | 224 / 230 |
uterus | 100% | 4077.01 | 170 / 170 | 97% | 13.80 | 445 / 459 |
bladder | 100% | 3139.76 | 21 / 21 | 96% | 11.87 | 486 / 504 |
esophagus | 100% | 3001.63 | 1440 / 1445 | 97% | 11.51 | 177 / 183 |
intestine | 100% | 3217.47 | 965 / 966 | 96% | 10.10 | 504 / 527 |
stomach | 100% | 2715.30 | 359 / 359 | 95% | 10.44 | 273 / 286 |
liver | 94% | 986.52 | 213 / 226 | 86% | 6.98 | 349 / 406 |
adipose | 100% | 3581.90 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 3924.86 | 1335 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 12.79 | 29 / 29 |
spleen | 100% | 2828.83 | 241 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 6.34 | 1 / 1 |
muscle | 99% | 1571.08 | 796 / 803 | 0% | 0 | 0 / 0 |
heart | 99% | 2050.98 | 849 / 861 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 98% | 11.78 | 44 / 45 |
eye | 0% | 0 | 0 / 0 | 94% | 12.89 | 75 / 80 |
peripheral blood | 82% | 1507.52 | 758 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0015031 | Biological process | protein transport |
GO_0006888 | Biological process | endoplasmic reticulum to Golgi vesicle-mediated transport |
GO_0005783 | Cellular component | endoplasmic reticulum |
GO_0016020 | Cellular component | membrane |
GO_0005789 | Cellular component | endoplasmic reticulum membrane |
GO_0005515 | Molecular function | protein binding |
Gene name | SEC22C |
Protein name | SEC22 homolog C, vesicle trafficking protein Vesicle-trafficking protein SEC22c (SEC22 vesicle-trafficking protein homolog C) (SEC22 vesicle-trafficking protein-like 3) SEC22 vesicle trafficking protein-like protein C isoform 3 SEC22 vesicle trafficking protein-like protein C isoform 2 SEC22 vesicle trafficking protein-like protein C isoform 1 |
Synonyms | UNQ459/PRO784 SEC22L3 |
Description | FUNCTION: May be involved in vesicle transport between the ER and the Golgi complex. . FUNCTION: SNARE involved in targeting and fusion of ER-derived transport vesicles with the Golgi complex as well as Golgi-derived retrograde transport vesicles with the ER. . FUNCTION: May be involved in vesicle transport between the ER and the Golgi complex. . FUNCTION: May be involved in vesicle transport between the ER and the Golgi complex. . FUNCTION: May be involved in vesicle transport between the ER and the Golgi complex. . |
Accessions | C9JNW1 C9J9A4 Q9BRL7 ENST00000450981.5 H7C479 C9J2R1 A0A0S2Z4S8 A0A0S2Z4S0 ENST00000264454.8 [Q9BRL7-1] ENST00000273156.11 [Q9BRL7-2] ENST00000456515.5 C9J448 ENST00000451653.5 ENST00000454141.5 ENST00000445388.5 ENST00000417572.5 [Q9BRL7-2] ENST00000449617.5 ENST00000423701.6 [Q9BRL7-3] ENST00000383750.8 F8VQT7 F8WDR5 A0A024R2N5 ENST00000420163.1 F8WBN1 ENST00000416880.5 |