SCOC report

Query

Invalid input gene. Please select from the suggestions.

I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
smooth muscle cell	13 studies	21% ± 5%	Explore
fibroblast	12 studies	24% ± 12%	Explore
endothelial cell	10 studies	27% ± 10%	Explore
pericyte	10 studies	21% ± 8%	Explore
endothelial cell of lymphatic vessel	9 studies	20% ± 6%	Explore
glutamatergic neuron	9 studies	34% ± 17%	Explore
ciliated cell	9 studies	32% ± 16%	Explore
neuron	8 studies	37% ± 17%	Explore
oligodendrocyte	8 studies	24% ± 8%	Explore
epithelial cell	8 studies	37% ± 20%	Explore
astrocyte	7 studies	31% ± 14%	Explore
epithelial cell of proximal tubule	6 studies	25% ± 5%	Explore
kidney loop of Henle epithelial cell	6 studies	28% ± 7%	Explore
myofibroblast cell	6 studies	22% ± 3%	Explore
basal cell	6 studies	32% ± 21%	Explore
connective tissue cell	5 studies	26% ± 7%	Explore
interneuron	5 studies	34% ± 20%	Explore
pancreatic A cell	4 studies	52% ± 16%	Explore
type B pancreatic cell	4 studies	57% ± 21%	Explore
retinal ganglion cell	4 studies	78% ± 22%	Explore
amacrine cell	4 studies	55% ± 24%	Explore
retina horizontal cell	4 studies	49% ± 21%	Explore
GABAergic neuron	4 studies	46% ± 4%	Explore
pancreatic D cell	3 studies	49% ± 21%	Explore
progenitor cell	3 studies	17% ± 1%	Explore
kidney distal convoluted tubule epithelial cell	3 studies	35% ± 3%	Explore
renal alpha-intercalated cell	3 studies	35% ± 10%	Explore
endothelial cell of artery	3 studies	17% ± 2%	Explore
retinal bipolar neuron	3 studies	53% ± 19%	Explore
OFF-bipolar cell	3 studies	51% ± 27%	Explore
ON-bipolar cell	3 studies	51% ± 25%	Explore
GABAergic amacrine cell	3 studies	33% ± 13%	Explore
abnormal cell	3 studies	23% ± 4%	Explore
neuroendocrine cell	3 studies	38% ± 18%	Explore
retinal cone cell	3 studies	52% ± 15%	Explore
retinal rod cell	3 studies	30% ± 6%	Explore
Mueller cell	3 studies	47% ± 12%	Explore
mesothelial cell	3 studies	29% ± 17%	Explore
macrophage	3 studies	19% ± 3%	Explore
pancreatic ductal cell	3 studies	44% ± 20%	Explore
oligodendrocyte precursor cell	3 studies	28% ± 5%	Explore
goblet cell	3 studies	23% ± 8%	Explore
luminal hormone-sensing cell of mammary gland	3 studies	22% ± 4%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
brain	10 studies	27% ± 13%	Explore
eye	6 studies	36% ± 12%	Explore
lung	6 studies	29% ± 15%	Explore
kidney	5 studies	20% ± 3%	Explore
pancreas	4 studies	48% ± 21%	Explore
intestine	3 studies	26% ± 12%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
brain	100%	8393.90	2642 / 2642	100%	53.81	705 / 705
ovary	100%	2200.22	180 / 180	100%	28.39	429 / 430
adrenal gland	100%	3138.03	258 / 258	100%	73.96	229 / 230
uterus	100%	2812.78	170 / 170	99%	35.19	456 / 459
breast	100%	2890.08	459 / 459	99%	48.90	1110 / 1118
thymus	100%	2903.96	652 / 653	99%	38.97	601 / 605
kidney	100%	4169.78	89 / 89	99%	33.94	892 / 901
prostate	100%	3309.11	244 / 245	99%	55.32	499 / 502
bladder	100%	2705.38	21 / 21	99%	32.69	497 / 504
pancreas	99%	2157.42	326 / 328	99%	38.06	176 / 178
lung	98%	2194.13	569 / 578	100%	39.44	1150 / 1155
liver	100%	2017.03	226 / 226	97%	18.42	395 / 406
intestine	100%	2783.31	965 / 966	95%	29.14	500 / 527
esophagus	100%	3095.15	1445 / 1445	95%	28.15	173 / 183
stomach	100%	2263.20	359 / 359	94%	25.64	268 / 286
skin	95%	2215.23	1727 / 1809	92%	27.63	434 / 472
tonsil	0%	0	0 / 0	100%	28.04	45 / 45
ureter	0%	0	0 / 0	100%	24.50	1 / 1
adipose	100%	2580.50	1202 / 1204	0%	0	0 / 0
blood vessel	100%	3462.85	1332 / 1335	0%	0	0 / 0
spleen	99%	1479.84	238 / 241	0%	0	0 / 0
muscle	97%	1519.15	782 / 803	0%	0	0 / 0
heart	95%	3021.98	821 / 861	0%	0	0 / 0
lymph node	0%	0	0 / 0	83%	12.92	24 / 29
eye	0%	0	0 / 0	69%	10.92	55 / 80
peripheral blood	20%	785.05	186 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0