Name | Number of supported studies | Average coverage | |
---|---|---|---|
neuron | 7 studies | 40% ± 16% | |
GABAergic neuron | 7 studies | 41% ± 16% | |
enteroendocrine cell | 6 studies | 43% ± 18% | |
glutamatergic neuron | 6 studies | 33% ± 14% | |
ionocyte | 4 studies | 26% ± 4% | |
pancreatic A cell | 4 studies | 84% ± 10% | |
type B pancreatic cell | 4 studies | 65% ± 16% | |
neuroendocrine cell | 4 studies | 80% ± 21% | |
interneuron | 4 studies | 49% ± 25% | |
pancreatic D cell | 3 studies | 55% ± 14% | |
OFF-bipolar cell | 3 studies | 39% ± 13% | |
GABAergic amacrine cell | 3 studies | 32% ± 6% | |
oligodendrocyte precursor cell | 3 studies | 26% ± 8% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 96% | 11686.45 | 2527 / 2642 | 99% | 221.81 | 699 / 705 |
pancreas | 63% | 842.43 | 208 / 328 | 87% | 168.50 | 155 / 178 |
adrenal gland | 39% | 5776.12 | 100 / 258 | 81% | 3917.96 | 187 / 230 |
intestine | 48% | 516.07 | 460 / 966 | 21% | 7.37 | 113 / 527 |
skin | 6% | 75.81 | 108 / 1809 | 60% | 24.82 | 284 / 472 |
ovary | 32% | 580.26 | 57 / 180 | 20% | 3.91 | 88 / 430 |
prostate | 8% | 85.24 | 20 / 245 | 39% | 8.07 | 197 / 502 |
stomach | 25% | 401.84 | 91 / 359 | 19% | 4.98 | 54 / 286 |
blood vessel | 38% | 580.44 | 508 / 1335 | 0% | 0 | 0 / 0 |
kidney | 0% | 0 | 0 / 89 | 24% | 7.48 | 219 / 901 |
lung | 3% | 27.91 | 16 / 578 | 21% | 18.94 | 245 / 1155 |
esophagus | 14% | 123.36 | 200 / 1445 | 9% | 8.20 | 16 / 183 |
uterus | 8% | 69.02 | 13 / 170 | 14% | 21.08 | 62 / 459 |
breast | 1% | 9.48 | 6 / 459 | 16% | 12.25 | 178 / 1118 |
bladder | 0% | 0 | 0 / 21 | 14% | 14.39 | 72 / 504 |
thymus | 8% | 106.74 | 54 / 653 | 3% | 0.47 | 16 / 605 |
tonsil | 0% | 0 | 0 / 0 | 7% | 0.54 | 3 / 45 |
eye | 0% | 0 | 0 / 0 | 6% | 1.68 | 5 / 80 |
adipose | 6% | 76.75 | 69 / 1204 | 0% | 0 | 0 / 0 |
heart | 3% | 40.17 | 29 / 861 | 0% | 0 | 0 / 0 |
liver | 0% | 0 | 0 / 226 | 2% | 0.31 | 9 / 406 |
muscle | 0% | 3.46 | 3 / 803 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 0 | 0 / 929 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spleen | 0% | 0 | 0 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0001525 | Biological process | angiogenesis |
GO_2000352 | Biological process | negative regulation of endothelial cell apoptotic process |
GO_0006954 | Biological process | inflammatory response |
GO_0000165 | Biological process | MAPK cascade |
GO_0050918 | Biological process | positive chemotaxis |
GO_0001937 | Biological process | negative regulation of endothelial cell proliferation |
GO_0035556 | Biological process | intracellular signal transduction |
GO_0001938 | Biological process | positive regulation of endothelial cell proliferation |
GO_0043542 | Biological process | endothelial cell migration |
GO_0048245 | Biological process | eosinophil chemotaxis |
GO_2001237 | Biological process | negative regulation of extrinsic apoptotic signaling pathway |
GO_0050930 | Biological process | induction of positive chemotaxis |
GO_0009306 | Biological process | protein secretion |
GO_0098992 | Cellular component | neuronal dense core vesicle |
GO_0005615 | Cellular component | extracellular space |
GO_0005788 | Cellular component | endoplasmic reticulum lumen |
GO_0030141 | Cellular component | secretory granule |
GO_0042056 | Molecular function | chemoattractant activity |
GO_0005515 | Molecular function | protein binding |
GO_0005125 | Molecular function | cytokine activity |
Gene name | SCG2 |
Protein name | Secretogranin-2 (Chromogranin-C) (Secretogranin II) (SgII) [Cleaved into: Secretoneurin (SN); Manserin] Secretogranin-2 (Secretogranin II) |
Synonyms | CHGC |
Description | FUNCTION: Neuroendocrine protein of the granin family that regulates the biogenesis of secretory granules. . FUNCTION: Neuroendocrine protein of the granin family that regulates the biogenesis of secretory granules. . FUNCTION: Neuroendocrine protein of the granin family that regulates the biogenesis of secretory granules. . |
Accessions | C9JDT0 ENST00000421386.1 ENST00000433889.1 C9JQI2 P13521 ENST00000305409.3 |